RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 VSIG10LQ86VR7 867 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 NME8Q8N427 588 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 SLC25A41Q8N5S1 370 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 SAMD3Q8N6K7 520 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 TUBB6Q9BUF5 446 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 APOL6Q9BWW8 343 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 SHOC2Q9UQ13 582 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.42□□□□□ -0.42
MSH6-204ENST00000445503 KBTBD13C9JR72 458 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 VWA5AO00534 786 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 PEX10O60683 326 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 ASMTLO95671 621 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 LMNAP02545 664 aaKnown RBP12.41□□□□□ -0.42
MSH6-204ENST00000445503 SUPT20HL2P0C7V6 817 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 CHI3L2Q15782 390 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 KBTBD12Q3ZCT8 623 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 SUPT20HL1Q3ZLR7 823 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 SESTD1Q86VW0 696 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 FAM149B1Q96BN6 582 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 KLC2Q9H0B6 622 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 MYOZ2Q9NPC6 264 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 XPNPEP1Q9NQW7 623 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 PIH1D1Q9NWS0 290 aaKnown RBP12.41□□□□□ -0.42
MSH6-204ENST00000445503 ZNRF3Q9ULT6 936 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 TTLL3Q9Y4R7 772 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 KAT6AQ92794 2004 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 PTDSS1P48651 473 aaKnown RBP12.41□□□□□ -0.42
MSH6-204ENST00000445503 CNTN2Q02246 1040 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 MCL1Q07820 350 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 MMRN1Q13201 1228 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 TFDP2Q14188 446 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 NBPF12Q5TAG4 269 aaPredicted RBP12.41□□□□□ -0.42
MSH6-204ENST00000445503 ATG16L1Q676U5 607 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 RHBDF2Q6PJF5 856 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 UNC45BQ8IWX7 931 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 NDUFAF2Q8N183 169 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 JOSD2Q8TAC2 188 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 WNK4Q96J92 1243 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 ZNF570Q96NI8 536 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 CYP39A1Q9NYL5 469 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 AKT3Q9Y243 479 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 hCG_1818297A0A087WSY0 165 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 FAM237BA0A1B0GVD1 139 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 A6NJR5 290 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 KRT36O76013 467 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 LYPLA2O95372 231 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 P4HA1P13674 534 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 FNBP1LQ5T0N5 605 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 TRIM50Q86XT4 487 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 PPP4R1Q8TF05 950 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 ATP2A3Q93084 1043 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 TEX13BQ9BXU2 312 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 IFT122Q9HBG6 1241 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 HESX1Q9UBX0 185 aa12.41□□□□□ -0.42
MSH6-204ENST00000445503 TMEM191CA6NGB0 347 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 ALOX15BO15296 676 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 C4BPAP04003 597 aaKnown RBP12.4□□□□□ -0.42
MSH6-204ENST00000445503 CD48P09326 243 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 SESN2P58004 480 aaPredicted RBP12.4□□□□□ -0.42
MSH6-204ENST00000445503 SNX30Q5VWJ9 437 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 AP1ARQ63HQ0 302 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 VCPIP1Q96JH7 1222 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 FERMT1Q9BQL6 677 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 TRIM4Q9C037 500 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 LGALS13Q9UHV8 139 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 ACTL7BQ9Y614 415 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 NPM3O75607 178 aaKnown RBP12.4□□□□□ -0.42
MSH6-204ENST00000445503 KRT38O76015 456 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 ZCCHC18P0CG32 403 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 GDF10P55107 478 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 TAP1Q03518 808 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 CXCL9Q07325 125 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 MGAT5Q09328 741 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 PLEKHA7Q6IQ23 1121 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 ZCCHC23Q6ZST2 131 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 STRA6Q9BX79 667 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 DEFB129Q9H1M3 183 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 DHX35Q9H5Z1 703 aaKnown RBP12.4□□□□□ -0.42
MSH6-204ENST00000445503 DENND2DQ9H6A0 471 aaPredicted RBP12.4□□□□□ -0.42
MSH6-204ENST00000445503 DCLRE1BQ9H816 532 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 ARL8BQ9NVJ2 186 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 ZMYND8Q9ULU4 1186 aaPredicted RBP12.4□□□□□ -0.42
MSH6-204ENST00000445503 MTO1Q9Y2Z2 717 aaKnown RBP12.4□□□□□ -0.42
MSH6-204ENST00000445503 LOC100653049A0A140TA62 436 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 FCHO1O14526 889 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 FAM155BO75949 473 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 KRT34O76011 436 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 CYP1A1P04798 512 aaPredicted RBP12.4□□□□□ -0.42
MSH6-204ENST00000445503 MMP8P22894 467 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 NAMPTP43490 491 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 WNT7BP56706 349 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 RASA2Q15283 850 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.4□□□□□ -0.422e-7■■■■□ 25.1
MSH6-204ENST00000445503 PRPF39Q86UA1 669 aaKnown RBP12.4□□□□□ -0.42
MSH6-204ENST00000445503 PHF13Q86YI8 300 aaPredicted RBP12.4□□□□□ -0.42
MSH6-204ENST00000445503 OLIG1Q8TAK6 271 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 ALKBH8Q96BT7 664 aaKnown RBP12.4□□□□□ -0.42
MSH6-204ENST00000445503 PPP1R36Q96LQ0 422 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 MECRQ9BV79 373 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 ST6GALNAC4Q9H4F1 302 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms