RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 LONP2Q86WA8 852 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 LRRC15Q8TF66 581 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 SPATA17Q96L03 361 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 TMEM209Q96SK2 561 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 MMS19Q96T76 1030 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 TRIM9Q9C026 710 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 CRISPLD1Q9H336 500 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 PDE11AQ9HCR9 933 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 COMMD8Q9NX08 183 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 HSPBP1Q9NZL4 362 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 TRPM5Q9NZQ8 1165 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 MAGED2Q9UNF1 606 aaPredicted RBP8.32□□□□□ -1.08
CD44-211ENST00000442151 NOTCH4Q99466 2003 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 SLC38A8A6NNN8 435 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 GABRDO14764 452 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 POLR2DO15514 142 aaKnown RBP8.31□□□□□ -1.08
CD44-211ENST00000442151 GDF9O60383 454 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 LRRN2O75325 713 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 TACC1O75410 805 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 VNN2O95498 520 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 STAU1O95793 577 aaKnown RBP8.31□□□□□ -1.08
CD44-211ENST00000442151 WARSP23381 471 aaKnown RBP8.31□□□□□ -1.08
CD44-211ENST00000442151 GNL1P36915 607 aaPredicted RBP8.31□□□□□ -1.08
CD44-211ENST00000442151 GRIK1P39086 918 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 FAM160A1Q05DH4 1040 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 PSMD6Q15008 389 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 C6orf132Q5T0Z8 1188 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 TDRD10Q5VZ19 366 aaKnown RBP8.31□□□□□ -1.08
CD44-211ENST00000442151 FAM173BQ6P4H8 233 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 FAM171BQ6P995 826 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 NUDT18Q6ZVK8 323 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 USP34Q70CQ2 3546 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 LRRTM3Q86VH5 581 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 DDX42Q86XP3 938 aaKnown RBP eCLIP8.31□□□□□ -1.08
CD44-211ENST00000442151 SCN4BQ8IWT1 228 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 C12orf56Q8IXR9 622 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 MAML2Q8IZL2 1156 aaPredicted RBP8.31□□□□□ -1.08
CD44-211ENST00000442151 MAB21L3Q8N8X9 362 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 LPIN3Q9BQK8 851 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 SYT15Q9BQS2 421 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 CBWD1Q9BRT8 395 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 PI4K2AQ9BTU6 479 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 SLC46A2Q9BY10 475 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 GTF3C4Q9UKN8 822 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 L1RE1Q9UN81 338 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 SLC8A2Q9UPR5 921 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 TISP43B9A030 160 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 ARNTLO00327 626 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 EXOC3O60645 756 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 F13A1P00488 732 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 RETP07949 1114 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 TCF3P15923 654 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 ATF6P18850 670 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 CTHP32929 405 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 KCNA1Q09470 495 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 FZD5Q13467 585 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 KCNB1Q14721 858 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 SNRNP35Q16560 246 aaKnown RBP8.31□□□□□ -1.08
CD44-211ENST00000442151 KNOP1Q1ED39 458 aaKnown RBP8.31□□□□□ -1.08
CD44-211ENST00000442151 CEP68Q76N32 757 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 TRAPPC11Q7Z392 1133 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 DGLUCYQ7Z3D6 616 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 C11orf74Q86VG3 221 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 KIAA2013Q8IYS2 634 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 CAMKK1Q8N5S9 505 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 SUMF1Q8NBK3 374 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 STKLD1Q8NE28 680 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 PDZD8Q8NEN9 1154 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 DDX1Q92499 740 aaKnown RBP8.31□□□□□ -1.08
CD44-211ENST00000442151 ATP2A3Q93084 1043 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 TNIP3Q96KP6 325 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 CGRRF1Q99675 332 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 MTMR12Q9C0I1 747 aa8.31□□□□□ -1.08
CD44-211ENST00000442151 SMG5Q9UPR3 1016 aaKnown RBP8.31□□□□□ -1.08
CD44-211ENST00000442151 DOCK6Q96HP0 2047 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 TRDMT1O14717 391 aaKnown RBP8.3□□□□□ -1.08
CD44-211ENST00000442151 CALUO43852 315 aaPredicted RBP8.3□□□□□ -1.08
CD44-211ENST00000442151 SOAT2O75908 522 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 AKAP3O75969 853 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 RTN3O95197 1032 aaPredicted RBP8.3□□□□□ -1.08
CD44-211ENST00000442151 NFATC1O95644 943 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 RPN1P04843 607 aaKnown RBP8.3□□□□□ -1.08
CD44-211ENST00000442151 CKMP06732 381 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 HMGA1P17096 107 aaKnown RBP8.3□□□□□ -1.08
CD44-211ENST00000442151 HDCP19113 662 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 CASP5P51878 434 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 CYP4F8P98187 520 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 SIM2Q14190 667 aaPredicted RBP8.3□□□□□ -1.08
CD44-211ENST00000442151 BMT2Q1RMZ1 405 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 EPM2AIP1Q7L775 607 aaPredicted RBP8.3□□□□□ -1.08
CD44-211ENST00000442151 WDR5BQ86VZ2 330 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 CCDC150Q8NCX0 1101 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 OR6B3Q8NGW1 331 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 MYCBPAPQ8TBZ2 947 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 TAF4BQ92750 862 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 ACDQ96AP0 544 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 LOXL4Q96JB6 756 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 C8orf48Q96LL4 319 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 SLITRK1Q96PX8 696 aa8.3□□□□□ -1.08
CD44-211ENST00000442151 GTPBP4Q9BZE4 634 aaKnown RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms