RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 RNF19BQ6ZMZ0 732 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 PDZD4Q76G19 769 aaPredicted RBP13□□□□□ -0.33
PTPRF-208ENST00000437607 TMC6Q7Z403 805 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 WDR49Q8IV35 697 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 BEST2Q8NFU1 509 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 PARD3BQ8TEW8 1205 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 SMARCD2Q92925 531 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 RSPRY1Q96DX4 576 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 TRMT61BQ9BVS5 477 aaKnown RBP13□□□□□ -0.33
PTPRF-208ENST00000437607 LRRC3Q9BY71 257 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 CHRDQ9H2X0 955 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 CRISPLD1Q9H336 500 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 BRD9Q9H8M2 597 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 TMEM8AQ9HCN3 771 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 PDE11AQ9HCR9 933 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 PARD6AQ9NPB6 346 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 TRPV5Q9NQA5 729 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 GCNT4Q9P109 453 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 AFF4Q9UHB7 1163 aaKnown RBP13□□□□□ -0.33
PTPRF-208ENST00000437607 MRPS17Q9Y2R5 130 aaKnown RBP13□□□□□ -0.33
PTPRF-208ENST00000437607 NUB1Q9Y5A7 615 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 ITIH6Q6UXX5 1313 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 A0A1W2PQC6 194 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 M0QZQ0 153 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 TEX33O43247 280 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 PTMAP06454 111 aaKnown RBP12.99□□□□□ -0.33
PTPRF-208ENST00000437607 TPM1P09493 284 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 PSMC3P17980 439 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 GDI1P31150 447 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 GTF2H1P32780 548 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 AP3M2P53677 418 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 ATXN1P54253 815 aaKnown RBP12.99□□□□□ -0.33
PTPRF-208ENST00000437607 BIRC3Q13489 604 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 GAS6Q14393 721 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 NR1I3Q14994 352 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 SYCP1Q15431 976 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 WDR44Q5JSH3 913 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 SPECC1LQ69YQ0 1117 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 ZNF280DQ6N043 979 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 GBP6Q6ZN66 633 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 VSTM4Q8IW00 320 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 CD302Q8IX05 232 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 SHKBP1Q8TBC3 707 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 PLEKHO2Q8TD55 490 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 IRF7Q92985 503 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 ANKRD36BP1Q96IX9 119 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 TRPV4Q9HBA0 871 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 PCDHB8Q9UN66 801 aa12.99□□□□□ -0.33
PTPRF-208ENST00000437607 HELZP42694 1942 aaKnown RBP12.99□□□□□ -0.33
PTPRF-208ENST00000437607 CNOT1A5YKK6 2376 aaKnown RBP12.98□□□□□ -0.33
PTPRF-208ENST00000437607 GTPBP10A4D1E9 387 aaKnown RBP12.98□□□□□ -0.33
PTPRF-208ENST00000437607 MAN2B1O00754 1011 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 P4HA2O15460 535 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 TNNC2P02585 160 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 OR4Q2P0C623 313 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 MYL4P12829 197 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 TRIM21P19474 475 aaKnown RBP12.98□□□□□ -0.33
PTPRF-208ENST00000437607 PIK3CAP42336 1068 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 GCLMP48507 274 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 DLG4P78352 724 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 TMEM132DQ14C87 1099 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 TEAD2Q15562 447 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 ZBTB6Q15916 424 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 EXOC3L4Q17RC7 722 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 CYP4A22Q5TCH4 519 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 LMBRD2Q68DH5 695 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-208ENST00000437607 KRT39Q6A163 491 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 MAMSTRQ6ZN01 415 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 TMC8Q8IU68 726 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 MFSD6LQ8IWD5 586 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 SPC24Q8NBT2 197 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 ZSCAN18Q8TBC5 510 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-208ENST00000437607 FAM3CQ92520 227 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 IQCDQ96DY2 449 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 ZNF512Q96ME7 567 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-208ENST00000437607 ERGIC2Q96RQ1 377 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 LSM14BQ9BX40 385 aaKnown RBP12.98□□□□□ -0.33
PTPRF-208ENST00000437607 FAM126AQ9BYI3 521 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-208ENST00000437607 ASB7Q9H672 318 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 LMAN1LQ9HAT1 526 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 YIPF1Q9Y548 306 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.98□□□□□ -0.33
PTPRF-208ENST00000437607 TIMM13Q9Y5L4 95 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-208ENST00000437607 PIAS3Q9Y6X2 628 aa12.98□□□□□ -0.33
PTPRF-208ENST00000437607 NUP205Q92621 2012 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 TTC26A0AVF1 554 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 HEPACAM2A8MVW5 462 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 XPOTO43592 962 aaKnown RBP12.97□□□□□ -0.33
PTPRF-208ENST00000437607 PHACTR2O75167 634 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 OAZ2O95190 189 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 NFICP08651 508 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 CHRNB1P11230 501 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 CPB1P15086 417 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 LRPAP1P30533 357 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 AARSP49588 968 aaKnown RBP eCLIP12.97□□□□□ -0.333e-8■■■■■ 82.4
PTPRF-208ENST00000437607 WNT7BP56706 349 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 TFAMQ00059 246 aaKnown RBP12.97□□□□□ -0.33
PTPRF-208ENST00000437607 PPP3CAQ08209 521 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 CBWD6Q4V339 395 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 CBWD3Q5JTY5 395 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms