RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ATP10BO94823 1461 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 BBOX1O75936 387 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 F9P00740 461 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 ADD1P35611 737 aaKnown RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 PSMD4P55036 377 aaKnown RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 JAMLQ86YT9 394 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 MYLK4Q86YV6 388 aaPredicted RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 MYO1HQ8N1T3 1032 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 TDRD5Q8NAT2 981 aaKnown RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 SYTL5Q8TDW5 730 aaPredicted RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 MYDGFQ969H8 173 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 TMCO6Q96DC7 493 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 ARHGEF3Q9NR81 526 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 PNPLA7Q6ZV29 1317 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 USP17L12C9JPN9 530 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 USP17L21D6R901 530 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 NR3C2P08235 984 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 TCF4P15884 667 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 PTX3P26022 381 aaPredicted RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 KDSRQ06136 332 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 INSCQ1MX18 579 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 ZNF699Q32M78 642 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 FASTKD1Q53R41 847 aaKnown RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 SNX30Q5VWJ9 437 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 KRT78Q8N1N4 520 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 GORASP1Q9BQQ3 440 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 OVOS2A0A0G2JMS6 1433 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 UNC13BO14795 1591 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 PIK3CBP42338 1070 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 CYP27A1Q02318 531 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 NDUFAF6Q330K2 333 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 TBC1D10BQ4KMP7 808 aaPredicted RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 INO80DQ53TQ3 878 aaPredicted RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 ABRAXAS1Q6UWZ7 409 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 SH2D3CQ8N5H7 860 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 GLMNQ92990 594 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 AP1M1Q9BXS5 423 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 C3orf18Q9UK00 162 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 SNAP23O00161 211 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 BAIAP3O94812 1187 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 MPOP05164 745 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 CHN2P52757 468 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 SCAIQ8N9R8 606 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 PTCD3Q96EY7 689 aaKnown RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 CAMKK2Q96RR4 588 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 PRPF19Q9UMS4 504 aaKnown RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 H0YJX3 145 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 MYL12AP19105 171 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 TRAF3Q13114 568 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 NCAPHQ15003 741 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 OASLQ15646 514 aaKnown RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 C12orf60Q5U649 245 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 SLFN13Q68D06 897 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 EYA1Q99502 592 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 TMBIM4Q9HC24 238 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 PNMA3Q9UL41 463 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 MROH7-TTC4A0A0A0MT08 1334 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 hCG_1642624A0A1W2PR95 340 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 FAM220BPB1ANY3 271 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 CLDN3O15551 220 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 IL6STP40189 918 aaPredicted RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 MAGEA4P43358 317 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 ZNF827Q17R98 1081 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 ZNF554Q86TJ5 538 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 CCNYL1Q8N7R7 359 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 TBCKQ8TEA7 893 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 C18orf8Q96DM3 657 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 AGPAT1Q99943 283 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 EPB41L4BQ9H329 900 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 SYTL2Q9HCH5 934 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 TBCCD1Q9NVR7 557 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 MAP3K20Q9NYL2 800 aaKnown RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 CPDO75976 1380 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 RGS5O15539 181 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 CAPZA2P47755 286 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 EIF4A1P60842 406 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 NFRKBQ6P4R8 1299 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 RDH11Q8TC12 318 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 BTBD10Q9BSF8 475 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 CYP39A1Q9NYL5 469 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 CEP152O94986 1710 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 HEATR9A2RTY3 570 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 ARIH2O95376 493 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 SLC7A5Q01650 507 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 ZBTB49Q6ZSB9 765 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 PTF1AQ7RTS3 328 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 CMTR1Q8N1G2 835 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 ZNF557Q8N988 423 aaPredicted RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 STOX2Q9P2F5 926 aaPredicted RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 ATPIF1Q9UII2 106 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 KCNA2P16389 499 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 GNA15P30679 374 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 LLGL1Q15334 1064 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 KCTD21Q4G0X4 260 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 PDCD4Q53EL6 469 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 RSBN1Q5VWQ0 802 aaPredicted RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 ZDHHC13Q8IUH4 622 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 MYLPFQ96A32 169 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 PNPLA8Q9NP80 782 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms