RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 NCOA4Q13772 614 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 TFDP1Q14186 410 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 PRKD1Q15139 912 aaPredicted RBP11.54□□□□□ -0.56
LIMS1-207ENST00000422797 MAPK6Q16659 721 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 TRMT5Q32P41 509 aaKnown RBP11.54□□□□□ -0.56
LIMS1-207ENST00000422797 WDR72Q3MJ13 1102 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 GNPTABQ3T906 1256 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 FAM182BQ5T319 152 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 AP1ARQ63HQ0 302 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 NAIF1Q69YI7 327 aaPredicted RBP11.54□□□□□ -0.56
LIMS1-207ENST00000422797 ZPBP2Q6X784 338 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 LRRC74BQ6ZQY2 392 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 TAS1R3Q7RTX0 852 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 PRUNE1Q86TP1 453 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 VSIG10LQ86VR7 867 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 RHPN2Q8IUC4 686 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 PASD1Q8IV76 773 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 SEPT12Q8IYM1 358 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 ZNF276Q8N554 614 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 FBXO36Q8NEA4 188 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 DEPTORQ8TB45 409 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 CCDC110Q8TBZ0 833 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 SLC44A1Q8WWI5 657 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 CPT1BQ92523 772 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 FAM136AQ96C01 138 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 MTBPQ96DY7 904 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 TAAR1Q96RJ0 339 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 FAM167BQ9BTA0 163 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 MSTO1Q9BUK6 570 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 NIF3L1Q9GZT8 377 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 WWP1Q9H0M0 922 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 LHX5Q9H2C1 402 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 FAM96AQ9H5X1 160 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 APOBEC3GQ9HC16 384 aaKnown RBP11.54□□□□□ -0.56
LIMS1-207ENST00000422797 GPAMQ9HCL2 828 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 XPNPEP1Q9NQW7 623 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 NMRK1Q9NWW6 199 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 SEPT9Q9UHD8 586 aaPredicted RBP11.54□□□□□ -0.56
LIMS1-207ENST00000422797 ASB3Q9Y575 518 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 SIP14410 1827 aa11.54□□□□□ -0.56
LIMS1-207ENST00000422797 EP400Q96L91 3159 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 A0A0B4J269 797 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 TESPA1A2RU30 521 aaPredicted RBP11.53□□□□□ -0.56
LIMS1-207ENST00000422797 TMEM150BA6NC51 233 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 SIGLEC16A6NMB1 481 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 CHADO15335 359 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 CSDE1O75534 798 aaKnown RBP11.53□□□□□ -0.56
LIMS1-207ENST00000422797 KRT37O76014 449 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 ZSCAN5DPP0CG00 497 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 RARBP10826 455 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 OAZ1P54368 228 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 NLRP11P59045 1033 aaKnown RBP11.53□□□□□ -0.56
LIMS1-207ENST00000422797 PRKCEQ02156 737 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 TFDP2Q14188 446 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 EMC2Q15006 297 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 RCN1Q15293 331 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 ZYXQ15942 572 aaKnown RBP11.53□□□□□ -0.56
LIMS1-207ENST00000422797 FAM47CQ5HY64 1035 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 TTC39BQ5VTQ0 682 aaPredicted RBP11.53□□□□□ -0.56
LIMS1-207ENST00000422797 SNX30Q5VWJ9 437 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 NET1Q7Z628 596 aaPredicted RBP11.53□□□□□ -0.56
LIMS1-207ENST00000422797 TMPRSS6Q8IU80 811 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 BRSK2Q8IWQ3 736 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 GLIS1Q8NBF1 620 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 LRRC39Q96DD0 335 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 OXNAD1Q96HP4 312 aaPredicted RBP11.53□□□□□ -0.56
LIMS1-207ENST00000422797 MIPEPQ99797 713 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 FAM118BQ9BPY3 351 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 TMEM121Q9BTD3 319 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 TMEM120AQ9BXJ8 343 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 ZNF341Q9BYN7 854 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 MIS12Q9H081 205 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 STN1Q9H668 368 aaKnown RBP11.53□□□□□ -0.56
LIMS1-207ENST00000422797 JPH1Q9HDC5 661 aaPredicted RBP11.53□□□□□ -0.56
LIMS1-207ENST00000422797 IL1RAPL1Q9NZN1 696 aa11.53□□□□□ -0.56
LIMS1-207ENST00000422797 A0A0G2JND7 137 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 C3orf70A6NLC5 250 aaPredicted RBP11.52□□□□□ -0.57
LIMS1-207ENST00000422797 K7ERI5 159 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 TRDMT1O14717 391 aaKnown RBP11.52□□□□□ -0.57
LIMS1-207ENST00000422797 ZNF862O60290 1169 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 ATP9AO75110 1047 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 SMIM24O75264 130 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 ENTPD5O75356 428 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 ECM2O94769 699 aaPredicted RBP11.52□□□□□ -0.57
LIMS1-207ENST00000422797 MMP10P09238 476 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 KCNA2P16389 499 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 PSMA2P25787 234 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 ETV4P43268 484 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 GCLCP48506 637 aaPredicted RBP11.52□□□□□ -0.57
LIMS1-207ENST00000422797 RPL7AP62424 266 aaKnown RBP11.52□□□□□ -0.57
LIMS1-207ENST00000422797 OTUD4Q01804 1114 aaKnown RBP11.52□□□□□ -0.57
LIMS1-207ENST00000422797 ZNF252P-AS1Q0IIN9 211 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 PTK7Q13308 1070 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 LLGL2Q6P1M3 1020 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 TMEM154Q6P9G4 183 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 PHLDB2Q86SQ0 1253 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 SLC26A11Q86WA9 606 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 ANKMY2Q8IV38 441 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 CDAN1Q8IWY9 1227 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms