RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 TTC30AQ86WT1 665 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 SPATA2LQ8IUW3 424 aaPredicted RBP8.69□□□□□ -1.02
VIM-202ENST00000421459 BRSK2Q8IWQ3 736 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 ADGRF2Q8IZF7 708 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 SYCP3Q8IZU3 236 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 CPA6Q8N4T0 437 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 CAMKK1Q8N5S9 505 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 KBTBD7Q8WVZ9 684 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 MYLPFQ96A32 169 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 LOXL4Q96JB6 756 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 MYRFLQ96LU7 910 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 ZNF560Q96MR9 790 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 EDEM2Q9BV94 578 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 LSM14BQ9BX40 385 aaKnown RBP8.69□□□□□ -1.02
VIM-202ENST00000421459 KIF9Q9HAQ2 790 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 CRTAC1Q9NQ79 661 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 NME7Q9Y5B8 376 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 SCN1AP35498 2009 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 ANK1P16157 1881 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 ZZEF1O43149 2961 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 BCLAF3A2AJT9 711 aaKnown RBP8.68□□□□□ -1.02
VIM-202ENST00000421459 C1QTNF9BB2RNN3 333 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 APBB3O95704 486 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 C1QTNF9P0C862 333 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 HDCP19113 662 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 SCP2P22307 547 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 PNPLA4P41247 253 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 RBP5P82980 135 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 MYL7Q01449 175 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 RRAGBQ5VZM2 374 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 FAM171BQ6P995 826 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 TMEM92Q6UXU6 159 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 SV2BQ7L1I2 683 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 CBWD2Q8IUF1 395 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 LRRC52Q8N7C0 313 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 RDH13Q8NBN7 331 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 USP33Q8TEY7 942 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 CACTINQ8WUQ7 758 aaKnown RBP8.68□□□□□ -1.02
VIM-202ENST00000421459 LEO1Q8WVC0 666 aaPredicted RBP8.68□□□□□ -1.02
VIM-202ENST00000421459 RLN3Q8WXF3 142 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 ELMO3Q96BJ8 720 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 TRMT2BQ96GJ1 504 aaKnown RBP8.68□□□□□ -1.02
VIM-202ENST00000421459 SYT15Q9BQS2 421 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 RNF38Q9H0F5 515 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 VPS45Q9NRW7 570 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 TMEM30AQ9NV96 361 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 SMPD4Q9NXE4 827 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 GDAP2Q9NXN4 497 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 ITGA11Q9UKX5 1188 aa8.68□□□□□ -1.02
VIM-202ENST00000421459 NUP210Q8TEM1 1887 aaPredicted RBP8.68□□□□□ -1.02
VIM-202ENST00000421459 LNP1A1A4G5 178 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 LEFTY2O00292 366 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 CLDN5O00501 218 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 FOXD2O60548 495 aaPredicted RBP8.67□□□□□ -1.02
VIM-202ENST00000421459 AKAP3O75969 853 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 ABL1P00519 1130 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 CST3P01034 146 aaPredicted RBP8.67□□□□□ -1.02
VIM-202ENST00000421459 TMEM191BP0C7N4 346 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 GARTP22102 1010 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 HOXD13P35453 343 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 GRIK1P39086 918 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 LHX1P48742 406 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 IRX4P78413 519 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 AMPD2Q01433 879 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 POU5F1Q01860 360 aaKnown RBP8.67□□□□□ -1.02
VIM-202ENST00000421459 CYP27A1Q02318 531 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 IFRD2Q12894 506 aaPredicted RBP8.67□□□□□ -1.02
VIM-202ENST00000421459 FOXC1Q12948 553 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 RESTQ13127 1097 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 ELF2Q15723 593 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 CFAP221Q4G0U5 840 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 FBXO43Q4G163 708 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 MDH1BQ5I0G3 518 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 ANO7Q6IWH7 933 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 ARMCX6Q7L4S7 300 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 LIMS2Q7Z4I7 341 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 BRAPQ7Z569 592 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 FILIP1Q7Z7B0 1213 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 C12orf40Q86WS4 652 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 NT5DC4Q86YG4 428 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 TMEM86AQ8N2M4 240 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 TOP6BLQ8N6T0 577 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 PDILTQ8N807 584 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 MDGA1Q8NFP4 955 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 TSTD1Q8NFU3 115 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 DDX1Q92499 740 aaKnown RBP8.67□□□□□ -1.02
VIM-202ENST00000421459 ATP2A3Q93084 1043 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 HVCN1Q96D96 273 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 ERLEC1Q96DZ1 483 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 HPDLQ96IR7 371 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 MRPL45Q9BRJ2 306 aaKnown RBP8.67□□□□□ -1.02
VIM-202ENST00000421459 DPEP3Q9H4B8 488 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 TMEM206Q9H813 350 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 ABCB6Q9NP58 842 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 FSCN3Q9NQT6 498 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 PANK4Q9NVE7 773 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 INTS13Q9NVM9 706 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 MAGEC2Q9UBF1 373 aaPredicted RBP8.67□□□□□ -1.02
VIM-202ENST00000421459 UXTQ9UBK9 157 aaPredicted RBP8.67□□□□□ -1.02
VIM-202ENST00000421459 SEL1LQ9UBV2 794 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms