RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 GBP2P32456 591 aaPredicted RBP13.26□□□□□ -0.29
SKA1-203ENST00000417656 GRIK1P39086 918 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 CCR2P41597 374 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 RAD23BP54727 409 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 EPHA5P54756 1037 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 GCNT1Q02742 428 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 MTMR3Q13615 1198 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 PHLDB3Q6NSJ2 640 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 GJB7Q6PEY0 223 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 VSTM1Q6UX27 236 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 PAQR9Q6ZVX9 377 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 OTOP3Q7RTS5 596 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 DNAJB7Q7Z6W7 309 aaPredicted RBP13.26□□□□□ -0.29
SKA1-203ENST00000417656 ITIH5Q86UX2 942 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 NPAS3Q8IXF0 933 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 CRYBG2Q8N1P7 616 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 TTC39CQ8N584 583 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 SLC4A11Q8NBS3 891 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 SLC2A14Q8TDB8 520 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 TCEAL4Q96EI5 215 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 SMARCD1Q96GM5 515 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 KREMEN1Q96MU8 473 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 LRRC3Q9BY71 257 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 VPS16Q9H269 839 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 AJAP1Q9UKB5 411 aaPredicted RBP13.26□□□□□ -0.29
SKA1-203ENST00000417656 USTQ9Y2C2 406 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 MRPS23Q9Y3D9 190 aaKnown RBP13.26□□□□□ -0.29
SKA1-203ENST00000417656 ASB3Q9Y575 518 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 MYO16Q9Y6X6 1858 aa13.26□□□□□ -0.29
SKA1-203ENST00000417656 MYH10P35580 1976 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 SLC38A8A6NNN8 435 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 TRIM66O15016 1216 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 AP1G2O75843 785 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 TPM2P07951 284 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 TRIM21P19474 475 aaKnown RBP13.25□□□□□ -0.29
SKA1-203ENST00000417656 ACO1P21399 889 aaKnown RBP13.25□□□□□ -0.29
SKA1-203ENST00000417656 PON1P27169 355 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 ANXA13P27216 316 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 COPB1P53618 953 aaKnown RBP13.25□□□□□ -0.29
SKA1-203ENST00000417656 IQCB1Q15051 598 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 TAF12Q16514 161 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 GJD3Q8N144 294 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 LEMD2Q8NC56 503 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 ANKRD20A12PQ8NF67 263 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 SHKBP1Q8TBC3 707 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 TMEM176AQ96HP8 235 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 FAM124BQ9H5Z6 455 aaPredicted RBP13.25□□□□□ -0.29
SKA1-203ENST00000417656 CBX8Q9HC52 389 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 SIX2Q9NPC8 291 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 AVENQ9NQS1 362 aaPredicted RBP13.25□□□□□ -0.29
SKA1-203ENST00000417656 APEX2Q9UBZ4 518 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 LIMA1Q9UHB6 759 aaKnown RBP13.25□□□□□ -0.29
SKA1-203ENST00000417656 MAGED2Q9UNF1 606 aaPredicted RBP13.25□□□□□ -0.29
SKA1-203ENST00000417656 PCDHB4Q9Y5E5 795 aa13.25□□□□□ -0.29
SKA1-203ENST00000417656 DENND4CQ5VZ89 1909 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 A0A1W2PRU2 124 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 SMTNL1A8MU46 457 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 LGALS16A8MUM7 142 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 BECN2A8MW95 431 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 MOSPD3O75425 235 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 NOL4O94818 638 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 CSH1P0DML2 217 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 CSH2P0DML3 217 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 CD19P15391 556 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 HMGA1P17096 107 aaKnown RBP13.24□□□□□ -0.29
SKA1-203ENST00000417656 CDK11BP21127 795 aaKnown RBP13.24□□□□□ -0.29
SKA1-203ENST00000417656 GABRR2P28476 465 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 KCNMA1Q12791 1236 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 TEAD2Q15562 447 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 PPP1R26Q5T8A7 1209 aaPredicted RBP13.24□□□□□ -0.29
SKA1-203ENST00000417656 CYP4A22Q5TCH4 519 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 TMEM270Q6UE05 265 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 APTXQ7Z2E3 356 aaKnown RBP13.24□□□□□ -0.29
SKA1-203ENST00000417656 LUZP1Q86V48 1076 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 RBBP8NLQ8NC74 664 aaPredicted RBP13.24□□□□□ -0.29
SKA1-203ENST00000417656 FGF13Q92913 245 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 ACSF2Q96CM8 615 aaPredicted RBP13.24□□□□□ -0.29
SKA1-203ENST00000417656 CYFIP2Q96F07 1278 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 C8orf48Q96LL4 319 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 HEXIM2Q96MH2 286 aaKnown RBP13.24□□□□□ -0.29
SKA1-203ENST00000417656 HNRNPABQ99729 332 aaKnown RBP13.24□□□□□ -0.29
SKA1-203ENST00000417656 LSM14BQ9BX40 385 aaKnown RBP13.24□□□□□ -0.29
SKA1-203ENST00000417656 DNAI2Q9GZS0 605 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 IL21Q9HBE4 155 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 UBE2TQ9NPD8 197 aaPredicted RBP13.24□□□□□ -0.29
SKA1-203ENST00000417656 DMAP1Q9NPF5 467 aaPredicted RBP13.24□□□□□ -0.29
SKA1-203ENST00000417656 CDH7Q9ULB5 785 aa13.24□□□□□ -0.29
SKA1-203ENST00000417656 VCANP13611 3396 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 NUP210Q8TEM1 1887 aaPredicted RBP13.23□□□□□ -0.29
SKA1-203ENST00000417656 ZNF197O14709 1029 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 TADA3O75528 432 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 BEST1O76090 585 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 CALCAP01258 141 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 FAM200BP0CF97 657 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 KRT5P13647 590 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 USP46P62068 366 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 CYP4F8P98187 520 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 IFRD2Q12894 506 aaPredicted RBP13.23□□□□□ -0.29
SKA1-203ENST00000417656 ARHGAP44Q17R89 818 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 GOLGA7BQ2TAP0 167 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms