RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ZNF761Q86XN6 746 aaPredicted RBP7.35□□□□□ -1.23
USP40-202ENST00000409945 CCAR1Q8IX12 1150 aaKnown RBP7.35□□□□□ -1.23
USP40-202ENST00000409945 SMC5Q8IY18 1101 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 CARFQ8N187 725 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 FAM43AQ8N2R8 423 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 FAM156AQ8NDB6 213 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 SDR42E1Q8WUS8 393 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 SNX33Q8WV41 574 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 STON2Q8WXE9 905 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 ABHD8Q96I13 439 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 CCDC17Q96LX7 622 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 PTPN18Q99952 460 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 B3GNT5Q9BYG0 378 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 OSBPL6Q9BZF3 934 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 NTMQ9P121 344 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 TRPS1Q9UHF7 1281 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 FBXO10Q9UK96 956 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 AGTPBP1Q9UPW5 1226 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 TRIM17Q9Y577 477 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 NAV1Q8NEY1 1877 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 TOX4O94842 621 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 UBXN7O94888 489 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 KRT18P05783 430 aaKnown RBP7.34□□□□□ -1.23
USP40-202ENST00000409945 XPAP23025 273 aaPredicted RBP7.34□□□□□ -1.23
USP40-202ENST00000409945 GCLCP48506 637 aaPredicted RBP7.34□□□□□ -1.23
USP40-202ENST00000409945 MAP2K6P52564 334 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 SLC16A1P53985 500 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 PDE1AP54750 535 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 BACE1P56817 501 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 ADAM8P78325 824 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 ZNF124Q15973 351 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 RNF151Q2KHN1 245 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 TSHZ3Q63HK5 1081 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 CELF5Q8N6W0 485 aaKnown RBP7.34□□□□□ -1.23
USP40-202ENST00000409945 ADAMTS17Q8TE56 1095 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 CGRRF1Q99675 332 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 SARGQ9BW04 601 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 STAP2Q9UGK3 403 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 ZDHHC9Q9Y397 364 aa7.34□□□□□ -1.23
USP40-202ENST00000409945 RPTORQ8N122 1335 aa7.34□□□□□ -1.24
USP40-202ENST00000409945 CDK5RAP2Q96SN8 1893 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 NPIPB6E9PJ23 425 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 GPAA1O43292 621 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 B3GALT2O43825 422 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 NRP2O60462 931 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 CAND2O75155 1236 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 ALDH1A2O94788 518 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 GH2P01242 217 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 PCSK1P29120 753 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 HMGCS2P54868 508 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 ATP2C1P98194 919 aaPredicted RBP7.33□□□□□ -1.24
USP40-202ENST00000409945 NUCB1Q02818 461 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 AGBL4Q5VU57 503 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 TATDN1Q6P1N9 297 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 TMEM179Q6ZVK1 233 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 CCHCR1Q8TD31 782 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 PMM1Q92871 262 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 RILPL2Q969X0 211 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 CCDC136Q96JN2 1154 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 APOL5Q9BWW9 433 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 NAPBQ9H115 298 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 PCDHGB6Q9Y5F9 930 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 NR2E3Q9Y5X4 410 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 MATN2O00339 956 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 LTA4HP09960 611 aaKnown RBP7.33□□□□□ -1.24
USP40-202ENST00000409945 NEK3P51956 506 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 HGFACQ04756 655 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 KLHDC10Q6PID8 442 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 CHST15Q7LFX5 561 aaPredicted RBP7.33□□□□□ -1.24
USP40-202ENST00000409945 UNC5BQ8IZJ1 945 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 ZNF444Q8N0Y2 327 aaPredicted RBP7.33□□□□□ -1.24
USP40-202ENST00000409945 CD99L2Q8TCZ2 262 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 AJUBAQ96IF1 538 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 VRK1Q99986 396 aaPredicted RBP7.33□□□□□ -1.24
USP40-202ENST00000409945 BHMT2Q9H2M3 363 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 HELLSQ9NRZ9 838 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 ATAD5Q96QE3 1844 aa7.33□□□□□ -1.24
USP40-202ENST00000409945 TUSC2O75896 110 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 CYP1A1P04798 512 aaPredicted RBP7.32□□□□□ -1.24
USP40-202ENST00000409945 SREBF1P36956 1147 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 PLCD1P51178 756 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 AFF3P51826 1226 aaKnown RBP7.32□□□□□ -1.24
USP40-202ENST00000409945 NRG3P56975 720 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 KCNA10Q16322 511 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 SBK1Q52WX2 424 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 COBLL1Q53SF7 1204 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 C12orf60Q5U649 245 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 CCSAPQ6IQ19 270 aaPredicted RBP7.32□□□□□ -1.24
USP40-202ENST00000409945 DENND1CQ8IV53 801 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 CFHR4Q92496 578 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 HDAC10Q969S8 669 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 FAM84AQ96KN4 292 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 STRBPQ96SI9 672 aaKnown RBP7.32□□□□□ -1.24
USP40-202ENST00000409945 TMEM168Q9H0V1 697 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 DIAPH3Q9NSV4 1193 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 CPA4Q9UI42 421 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 ADAM29Q9UKF5 820 aa7.32□□□□□ -1.24
USP40-202ENST00000409945 TCAF2A6NFQ2 919 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 H3BML4 177 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 PRKAB2O43741 272 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms