RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 CLDN5O00501 218 aa14.83□□□□□ -0.04
GPNMB-203ENST00000409458 GABBR2O75899 941 aa14.83□□□□□ -0.04
GPNMB-203ENST00000409458 KRT3P12035 628 aa14.83□□□□□ -0.04
GPNMB-203ENST00000409458 PAX3P23760 479 aa14.83□□□□□ -0.04
GPNMB-203ENST00000409458 OR1G1P47890 313 aa14.83□□□□□ -0.04
GPNMB-203ENST00000409458 CDR1P51861 262 aa14.83□□□□□ -0.04
GPNMB-203ENST00000409458 TAS2R40P59535 323 aa14.83□□□□□ -0.04
GPNMB-203ENST00000409458 FAM102AQ5T9C2 384 aaPredicted RBP14.83□□□□□ -0.04
GPNMB-203ENST00000409458 AADACL2Q6P093 401 aa14.83□□□□□ -0.04
GPNMB-203ENST00000409458 PAQR9Q6ZVX9 377 aa14.83□□□□□ -0.04
GPNMB-203ENST00000409458 ABI1Q8IZP0 508 aa14.83□□□□□ -0.04
GPNMB-203ENST00000409458 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.83□□□□□ -0.04
GPNMB-203ENST00000409458 VWCEQ96DN2 955 aa14.83□□□□□ -0.04
GPNMB-203ENST00000409458 RNPC3Q96LT9 517 aaKnown RBP14.83□□□□□ -0.04
GPNMB-203ENST00000409458 HNRNPABQ99729 332 aaKnown RBP14.83□□□□□ -0.04
GPNMB-203ENST00000409458 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.83□□□□□ -0.04
GPNMB-203ENST00000409458 ANKZF1Q9H8Y5 726 aa14.83□□□□□ -0.04
GPNMB-203ENST00000409458 RNF216Q9NWF9 866 aaPredicted RBP14.83□□□□□ -0.04
GPNMB-203ENST00000409458 HCSTQ9UBK5 93 aa14.83□□□□□ -0.04
GPNMB-203ENST00000409458 USTQ9Y2C2 406 aa14.83□□□□□ -0.04
GPNMB-203ENST00000409458 PRG3Q9Y2Y8 225 aaPredicted RBP14.83□□□□□ -0.04
GPNMB-203ENST00000409458 TMEM189-UBE2V1I3L0A0 370 aa14.82□□□□□ -0.04
GPNMB-203ENST00000409458 RFC1P35251 1148 aaPredicted RBP14.82□□□□□ -0.04
GPNMB-203ENST00000409458 OR6B2Q6IFH4 312 aa14.82□□□□□ -0.04
GPNMB-203ENST00000409458 TMEM110Q86TL2 294 aa14.82□□□□□ -0.04
GPNMB-203ENST00000409458 NPAS4Q8IUM7 802 aa14.82□□□□□ -0.04
GPNMB-203ENST00000409458 EMC1Q8N766 993 aa14.82□□□□□ -0.04
GPNMB-203ENST00000409458 SPATA18Q8TC71 538 aa14.82□□□□□ -0.04
GPNMB-203ENST00000409458 STK32AQ8WU08 396 aa14.82□□□□□ -0.04
GPNMB-203ENST00000409458 UBE2Q2Q8WVN8 375 aa14.82□□□□□ -0.04
GPNMB-203ENST00000409458 FAM193BQ96PV7 902 aaPredicted RBP14.82□□□□□ -0.04
GPNMB-203ENST00000409458 B3GNT5Q9BYG0 378 aa14.82□□□□□ -0.04
GPNMB-203ENST00000409458 MIS12Q9H081 205 aa14.82□□□□□ -0.04
GPNMB-203ENST00000409458 DSEQ9UL01 958 aa14.82□□□□□ -0.04
GPNMB-203ENST00000409458 CDH9Q9ULB4 789 aa14.82□□□□□ -0.04
GPNMB-203ENST00000409458 MYBPHLA2RUH7 354 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 F8VP50 259 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 RHOXF2BP0C7M4 288 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 TCF4P15884 667 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 PCSK1P29120 753 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 PLA2G4AP47712 749 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 RPL34P49207 117 aaKnown RBP14.81□□□□□ -0.04
GPNMB-203ENST00000409458 CNKSR3Q6P9H4 555 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 OLFML1Q6UWY5 402 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.81□□□□□ -0.04
GPNMB-203ENST00000409458 METTL23Q86XA0 190 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 MMGT1Q8N4V1 131 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 GPR161Q8N6U8 529 aaKnown RBP14.81□□□□□ -0.04
GPNMB-203ENST00000409458 NIPA2Q8N8Q9 360 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 RHOXF2Q9BQY4 288 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 MED10Q9BTT4 135 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 DUSP16Q9BY84 665 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 NRDE2Q9H7Z3 1164 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 PCDH10Q9P2E7 1040 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 LCMT1Q9UIC8 334 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 TMEM59LQ9UK28 342 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 TTC7AQ9ULT0 858 aaPredicted RBP14.81□□□□□ -0.04
GPNMB-203ENST00000409458 PCDHB8Q9UN66 801 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 MKI67P46013 3256 aaKnown RBP14.81□□□□□ -0.04
GPNMB-203ENST00000409458 TBKBP1A7MCY6 615 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 XPO1O14980 1071 aaKnown RBP14.81□□□□□ -0.04
GPNMB-203ENST00000409458 PAPSS1O43252 624 aaPredicted RBP14.81□□□□□ -0.04
GPNMB-203ENST00000409458 HOXA2O43364 376 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 PSTPIP1O43586 416 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 BEST1O76090 585 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 FGGP02679 453 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 PYGMP11217 842 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 NPR3P17342 541 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 TYMPP19971 482 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 PSMA2P25787 234 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 ITGB8P26012 769 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 RWDD2BP57060 319 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 TUBB4BP68371 445 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 PLCB3Q01970 1234 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 PIGHQ14442 188 aaPredicted RBP14.81□□□□□ -0.04
GPNMB-203ENST00000409458 INTS6LQ5JSJ4 861 aaKnown RBP14.81□□□□□ -0.04
GPNMB-203ENST00000409458 OVOS1Q6IE37 1185 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 TRNP1Q6NT89 227 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 FAM35AQ86V20 835 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 OR10T2Q8NGX3 314 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 FNIP1Q8TF40 1166 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 CLEC4CQ8WTT0 213 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 PCED1BQ96HM7 432 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 AP1M1Q9BXS5 423 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 KRT82Q9NSB4 513 aa14.81□□□□□ -0.04
GPNMB-203ENST00000409458 COL4A6Q14031 1691 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 NLRC5Q86WI3 1866 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 VWA8A3KMH1 1905 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 TRIM43BA6NCK2 446 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 FAM200BP0CF97 657 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 RFC2P35250 354 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 GJC1P36383 396 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 SSR1P43307 286 aaKnown RBP14.8□□□□□ -0.04
GPNMB-203ENST00000409458 SEL1L2Q5TEA6 688 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 CLEC20AQ6ZU45 233 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 NECAB2Q7Z6G3 386 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 RHOT1Q8IXI2 618 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 MYCBPAPQ8TBZ2 947 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 MYLPFQ96A32 169 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 TRIM43Q96BQ3 446 aaPredicted RBP14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms