RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ZCCHC23Q6ZST2 131 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 PCGF5Q86SE9 256 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 ZBTB8OSQ8IWT0 167 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 SREK1Q8WXA9 508 aaKnown RBP12.46□□□□□ -0.41
HMGB1-206ENST00000405805 CENPTQ96BT3 561 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 TSNARE1Q96NA8 513 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 A1CFQ9NQ94 594 aaKnown RBP12.46□□□□□ -0.41
HMGB1-206ENST00000405805 NDE1Q9NXR1 346 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 PIM2Q9P1W9 311 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 M0QYV0 167 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 ATP5HO75947 161 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 LDHAP00338 332 aaKnown RBP12.46□□□□□ -0.41
HMGB1-206ENST00000405805 EIF2B2P49770 351 aaKnown RBP12.46□□□□□ -0.41
HMGB1-206ENST00000405805 CUL2Q13617 745 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 SLC1A5Q15758 541 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 DALRD3Q5D0E6 543 aaKnown RBP12.46□□□□□ -0.41
HMGB1-206ENST00000405805 SHC3Q92529 594 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 THAP11Q96EK4 314 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 YDJCA8MPS7 323 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 DRG2P55039 364 aaKnown RBP12.46□□□□□ -0.42
HMGB1-206ENST00000405805 CDH8P55286 799 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 USP46P62068 366 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 CXCL9Q07325 125 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 MED21Q13503 144 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 TRIM67Q6ZTA4 783 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 FAM228AQ86W67 206 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 CRLF3Q8IUI8 442 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 RCOR2Q8IZ40 523 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 NETO2Q8NC67 525 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 PLEKHO2Q8TD55 490 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 PPP4R1Q8TF05 950 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 DEPDC1BQ8WUY9 529 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 ZNF75CPQ92670 426 aaPredicted RBP12.46□□□□□ -0.42
HMGB1-206ENST00000405805 PREBQ9HCU5 417 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 JPH1Q9HDC5 661 aaPredicted RBP12.46□□□□□ -0.42
HMGB1-206ENST00000405805 GGA2Q9UJY4 613 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 PACSIN3Q9UKS6 424 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 SMG5Q9UPR3 1016 aaKnown RBP12.46□□□□□ -0.42
HMGB1-206ENST00000405805 TMX2Q9Y320 296 aa12.46□□□□□ -0.42
HMGB1-206ENST00000405805 IGKV6D-41A0A0C4DH26 115 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 PCP4L1A6NKN8 68 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 MGRN1O60291 552 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 KRT37O76014 449 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 UNC5CO95185 931 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 TAC1P20366 129 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 CIITAP33076 1130 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 CCDC15Q0P6D6 951 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 NR1H3Q13133 447 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 EML3Q32P44 896 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 RABGAP1LQ5R372 815 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 VSTM1Q6UX27 236 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 DRAXINQ8NBI3 349 aaPredicted RBP12.45□□□□□ -0.42
HMGB1-206ENST00000405805 ZBED2Q9BTP6 218 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 DNAI2Q9GZS0 605 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 DDX28Q9NUL7 540 aaKnown RBP12.45□□□□□ -0.42
HMGB1-206ENST00000405805 C4AP0C0L4 1744 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 C4BP0C0L5 1744 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 MAGEA13PA6NCF6 341 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 CCDC22O60826 627 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 LMNAP02545 664 aaKnown RBP12.45□□□□□ -0.42
HMGB1-206ENST00000405805 CAP2P40123 477 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 MYL6P60660 151 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 KPNB1Q14974 876 aaKnown RBP12.45□□□□□ -0.42
HMGB1-206ENST00000405805 MTFR1Q15390 333 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 CCNG2Q16589 344 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 BMT2Q1RMZ1 405 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 ZNF667Q5HYK9 610 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 EFCAB3Q8N7B9 438 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 POU5F2Q8N7G0 328 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 ZNF606Q8WXB4 792 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 MKL1Q969V6 931 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 BTBD7Q9P203 1132 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 IGLV3-22A0A075B6J6 115 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 TCF4P15884 667 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 PEX5P50542 639 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 GEMIN4P57678 1058 aaKnown RBP12.45□□□□□ -0.42
HMGB1-206ENST00000405805 ZNF568Q3ZCX4 644 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 PIGWQ7Z7B1 504 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 HEATR4Q86WZ0 1026 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 SYTL5Q8TDW5 730 aaPredicted RBP12.45□□□□□ -0.42
HMGB1-206ENST00000405805 ATP2A3Q93084 1043 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 AGAP3Q96P47 875 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 GIMAP4Q9NUV9 329 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 KCND2Q9NZV8 630 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 DOLKQ9UPQ8 538 aa12.45□□□□□ -0.42
HMGB1-206ENST00000405805 ARHGAP10A1A4S6 786 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 P4HA2O15460 535 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 CALB1P05937 261 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 BCAR1P56945 870 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 IFRD2Q12894 506 aaPredicted RBP12.44□□□□□ -0.42
HMGB1-206ENST00000405805 CHI3L2Q15782 390 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 LACTB2Q53H82 288 aaPredicted RBP12.44□□□□□ -0.42
HMGB1-206ENST00000405805 IL31Q6EBC2 164 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 GMCL1P1Q8NEA9 526 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 ABHD8Q96I13 439 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 ANKRD36BP1Q96IX9 119 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 COQ7Q99807 217 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 CLIC5Q9NZA1 410 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 PIK3CDO00329 1044 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 AVILO75366 819 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms