RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 ARHGAP17Q68EM7 881 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 PLEKHA7Q6IQ23 1121 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 UBE2Q1Q7Z7E8 422 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 NT5DC3Q86UY8 548 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 XYLT1Q86Y38 959 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 EMC1Q8N766 993 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 LRRN4CLQ8ND94 238 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 OR10T2Q8NGX3 314 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 MYCBPAPQ8TBZ2 947 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 SLC35F5Q8WV83 523 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 DPF3Q92784 378 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 KCNK16Q96T55 309 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 RTP3Q9BQQ7 232 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 ZBED2Q9BTP6 218 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 IL23AQ9NPF7 189 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 AVENQ9NQS1 362 aaPredicted RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 METTL5Q9NRN9 209 aaKnown RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 SMARCAL1Q9NZC9 954 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 CDC23Q9UJX2 597 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 CDH9Q9ULB4 789 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 SNX12Q9UMY4 172 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 PCDHB8Q9UN66 801 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 SF3B1O75533 1304 aaKnown RBP eCLIP3.91□□□□□ -1.782e-6■■■■■ 75.3
RTN4-208ENST00000404909 CSPG5O95196 566 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 FGBP02675 491 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 CYP11A1P05108 521 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 NPR3P17342 541 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 BDNFP23560 247 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 RFC1P35251 1148 aaPredicted RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 IFRD2Q12894 506 aaPredicted RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 LLGL1Q15334 1064 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 TAF5Q15542 800 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 CTXN3Q4LDR2 81 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 SLC39A12Q504Y0 691 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 INTS6LQ5JSJ4 861 aaKnown RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 VARS2Q5ST30 1063 aaKnown RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 KIAA1841Q6NSI8 718 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 FUT10Q6P4F1 479 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 FAM183BPQ6ZVS7 135 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 PAQR9Q6ZVX9 377 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 C16orf59Q7L2K0 433 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 TAS1R1Q7RTX1 841 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 PIGZQ86VD9 579 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 LRRTM3Q86VH5 581 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 C3orf20Q8ND61 904 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 FEZF2Q8TBJ5 459 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 TSC1Q92574 1164 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 MYLPFQ96A32 169 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 PIWIL1Q96J94 861 aaKnown RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 MS4A14Q96JA4 679 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 PGLYRP2Q96PD5 576 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 HNRNPABQ99729 332 aaKnown RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 ACBD6Q9BR61 282 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 DUSP16Q9BY84 665 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 L2HGDHQ9H9P8 463 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 LRRC4Q9HBW1 653 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 TMLHEQ9NVH6 421 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 MARCH5Q9NX47 278 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 EHD2Q9NZN4 543 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 CXXC1Q9P0U4 656 aaPredicted RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 CHD7Q9P2D1 2997 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 F8VP50 259 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 TMEM189-UBE2V1I3L0A0 370 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 CEP104O60308 925 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 SLU7O95391 586 aaKnown RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 FAM163BP0C2L3 166 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 CAPN2P17655 700 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 TCP1P17987 556 aaKnown RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 TYMPP19971 482 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 MARCKSL1P49006 195 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 CACNA2D1P54289 1103 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 EPHB4P54760 987 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 SNX16P57768 344 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 ADIGQ0VDE8 80 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 ZNF211Q13398 564 aaPredicted RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 PPIGQ13427 754 aaKnown RBP eCLIP3.91□□□□□ -1.78
RTN4-208ENST00000404909 PKDCCQ504Y2 493 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 C11orf63Q6NUN7 778 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 CLEC20AQ6ZU45 233 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 SLFN11Q7Z7L1 901 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 FAM35AQ86V20 835 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 SPATA2LQ8IUW3 424 aaPredicted RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 JOSD2Q8TAC2 188 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 CLEC4CQ8WTT0 213 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 BCL7CQ8WUZ0 217 aaPredicted RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 NDRG1Q92597 394 aaKnown RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 KRT35Q92764 455 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 FAM149B1Q96BN6 582 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 ABI2Q9NYB9 513 aaPredicted RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 MYO9BQ13459 2157 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 TANC1Q9C0D5 1861 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 MICAL3Q7RTP6 2002 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 UQCRHLA0A096LP55 91 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 TMEM191CA6NGB0 347 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 SIGLEC16A6NMB1 481 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 PAPSS1O43252 624 aaPredicted RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 EFCAB14O75071 495 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 MTA2O94776 668 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 UQCRHP07919 91 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 SETSIPP0DME0 302 aa3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms