RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 BRWD1Q9NSI6 2320 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 SF3B1O75533 1304 aaKnown RBP eCLIP10.82□□□□□ -0.68
COL6A3-205ENST00000392004 GOLGA6L10A6NI86 522 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 SGK1O00141 431 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 TSPAN3O60637 253 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 RPLP2P05387 115 aaKnown RBP10.82□□□□□ -0.68
COL6A3-205ENST00000392004 RALAP11233 206 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 GJA1P17302 382 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 SAT1P21673 171 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 VAV2P52735 878 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 CDK17Q00537 523 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 SERINC5Q86VE9 423 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 ECHDC2Q86YB7 292 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 SYCE1Q8N0S2 351 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 TRIM58Q8NG06 486 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 MAGOHBQ96A72 148 aaKnown RBP10.82□□□□□ -0.68
COL6A3-205ENST00000392004 FAM81BQ96LP2 452 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 CAPN11Q9UMQ6 739 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 SH3BP1Q9Y3L3 701 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 CNTRLQ7Z7A1 2325 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 A0A1B0GUA9 196 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 M0QYT0 321 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 SHOX2O60902 331 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-205ENST00000392004 RRM1P23921 792 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 CYP2F1P24903 491 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 EPHB4P54760 987 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 ALS2CLQ60I27 953 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 NETO2Q8NC67 525 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 TMC2Q8TDI7 906 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 MRPS31Q92665 395 aaKnown RBP10.82□□□□□ -0.68
COL6A3-205ENST00000392004 TCF25Q9BQ70 676 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 UBN1Q9NPG3 1134 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 TBC1D13Q9NVG8 400 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 SPG21Q9NZD8 308 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 NAV1Q8NEY1 1877 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 SLC12A8A0AV02 714 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 TRDMT1O14717 391 aaKnown RBP10.81□□□□□ -0.68
COL6A3-205ENST00000392004 APOEP02649 317 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 ARL13BQ3SXY8 428 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 DAB2IPQ5VWQ8 1189 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 ENOSF1Q7L5Y1 443 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 CD302Q8IX05 232 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 USP38Q8NB14 1042 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 THAP2Q9H0W7 228 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 ITGA11Q9UKX5 1188 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 TTC7AQ9ULT0 858 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-205ENST00000392004 ZNF185O15231 689 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 GRM5P41594 1212 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 ATP1A2P50993 1020 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 DEUP1Q05D60 604 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 PPM1LQ5SGD2 360 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 HP1BP3Q5SSJ5 553 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-205ENST00000392004 RNF219Q5W0B1 726 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-205ENST00000392004 C8orf74Q6P047 294 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 CHSY1Q86X52 802 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 LRRC43Q8N309 656 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 SMARCAL1Q9NZC9 954 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 Q9Y3F1 56 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 FAM47DPA6NHR8 397 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 LRRC10BA6NIK2 292 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 DFFAO00273 331 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 BUB1BO60566 1050 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-205ENST00000392004 ADAMTS4O75173 837 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 LMO2P25791 158 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 DEFB103AP81534 67 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 PDCLQ13371 301 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 BIRC2Q13490 618 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 TPGS1Q6ZTW0 290 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 RHOBTB2Q9BYZ6 727 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 FZD8Q9H461 694 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 FAM8A1Q9UBU6 413 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 BARX2Q9UMQ3 279 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-205ENST00000392004 PLAGL2Q9UPG8 496 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 PCDHB5Q9Y5E4 795 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 MAD1L1Q9Y6D9 718 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 F8W810 466 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 RNF225M0QZC1 329 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-205ENST00000392004 NEMP1O14524 444 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 CALB1P05937 261 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 CALRP27797 417 aaKnown RBP10.81□□□□□ -0.68
COL6A3-205ENST00000392004 ADCY8P40145 1251 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 NFE2Q16621 373 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-205ENST00000392004 USP41Q3LFD5 358 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 NPAS4Q8IUM7 802 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 CCDC170Q8IYT3 715 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 RSPH1Q8WYR4 309 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 PABPC5Q96DU9 382 aaKnown RBP10.81□□□□□ -0.68
COL6A3-205ENST00000392004 IQCDQ96DY2 449 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 B3GNT5Q9BYG0 378 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 PLK2Q9NYY3 685 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 IKBKGQ9Y6K9 419 aa10.81□□□□□ -0.68
COL6A3-205ENST00000392004 MYH6P13533 1939 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 GOLGA6L7A0A1B0GV03 622 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 NRP1O14786 923 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 CCL16O15467 120 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 PTPN1P18031 435 aaKnown RBP10.8□□□□□ -0.68
COL6A3-205ENST00000392004 TKTP29401 623 aaKnown RBP10.8□□□□□ -0.68
COL6A3-205ENST00000392004 EPHB3P54753 998 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 SF3A3Q12874 501 aaKnown RBP eCLIP10.8□□□□□ -0.68
COL6A3-205ENST00000392004 ELAVL2Q12926 359 aaKnown RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms