RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 CHORDC1Q9UHD1 332 aaPredicted RBP10.19□□□□□ -0.78
COL4A6-202ENST00000372216 FKBP9O95302 570 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 VIL1P09327 827 aaKnown RBP10.19□□□□□ -0.78
COL4A6-202ENST00000372216 CASP4P49662 377 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 FKBP9P1Q75LS8 142 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 TLK2Q86UE8 772 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 PHACTR4Q8IZ21 702 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 KRT35Q92764 455 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 PNMA5Q96PV4 448 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 CGRRF1Q99675 332 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 PDCD2LQ9BRP1 358 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 RSPH9Q9H1X1 276 aaPredicted RBP10.19□□□□□ -0.78
COL4A6-202ENST00000372216 RSAD1Q9HA92 442 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 DDX4Q9NQI0 724 aaKnown RBP10.19□□□□□ -0.78
COL4A6-202ENST00000372216 C20orf96Q9NUD7 363 aaPredicted RBP10.19□□□□□ -0.78
COL4A6-202ENST00000372216 THEGQ9P2T0 379 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 SPASTQ9UBP0 616 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 DSEQ9UL01 958 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 FAM205AQ6ZU69 1335 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 RALBP11234 206 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 MAP3K7CLP57077 242 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 PPP2R2AP63151 447 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 GIT2Q14161 759 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 RNF168Q8IYW5 571 aaPredicted RBP10.19□□□□□ -0.78
COL4A6-202ENST00000372216 ZC3H15Q8WU90 426 aaKnown RBP10.19□□□□□ -0.78
COL4A6-202ENST00000372216 SPATA16Q9BXB7 569 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.19□□□□□ -0.78
COL4A6-202ENST00000372216 TRIM10Q9UDY6 481 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 F5H5T6 163 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 GYG2O15488 501 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 DGKIO75912 1065 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 CARSP49589 748 aaKnown RBP10.19□□□□□ -0.78
COL4A6-202ENST00000372216 PPATQ06203 517 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 PTGISQ16647 500 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 MTBPQ96DY7 904 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 TSPAN17Q96FV3 270 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 H2AFY2Q9P0M6 372 aaPredicted RBP10.19□□□□□ -0.78
COL4A6-202ENST00000372216 SLC39A10Q9ULF5 831 aa10.19□□□□□ -0.78
COL4A6-202ENST00000372216 H3BRB1 525 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 SGPL1O95470 568 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 EPHB3P54753 998 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 ERVK-9P63128 1117 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 ERVK-24P63145 666 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 BYSLQ13895 437 aaKnown RBP10.18□□□□□ -0.78
COL4A6-202ENST00000372216 VGLL4Q14135 290 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 TMEM132BQ14DG7 1078 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 ACAD10Q6JQN1 1059 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 SPATA18Q8TC71 538 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 SCFD1Q8WVM8 642 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 MRPS31Q92665 395 aaKnown RBP10.18□□□□□ -0.78
COL4A6-202ENST00000372216 FAM162AQ96A26 154 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 TUT1Q9H6E5 874 aaKnown RBP10.18□□□□□ -0.78
COL4A6-202ENST00000372216 NMRK2Q9NPI5 230 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 ZC3H7BQ9UGR2 993 aaKnown RBP10.18□□□□□ -0.78
COL4A6-202ENST00000372216 SNX12Q9UMY4 172 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 PLSCR1O15162 318 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 LUC7L3O95232 432 aaKnown RBP10.18□□□□□ -0.78
COL4A6-202ENST00000372216 FGFR1P11362 822 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 AKR1A1P14550 325 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 ACO1P21399 889 aaKnown RBP10.18□□□□□ -0.78
COL4A6-202ENST00000372216 SEC23AQ15436 765 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 FUT11Q495W5 492 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 C6orf10Q5SRN2 563 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 DEPDC1Q5TB30 811 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 RASGRP2Q7LDG7 609 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 INPP5DQ92835 1189 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 CENPTQ96BT3 561 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.18□□□□□ -0.78
COL4A6-202ENST00000372216 DDIT4Q9NX09 232 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 SNTG2Q9NY99 539 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 APPL1Q9UKG1 709 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 TMEM253P0C7T8 217 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 CHRM3P20309 590 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 FXR1P51114 621 aaKnown RBP eCLIP10.18□□□□□ -0.78
COL4A6-202ENST00000372216 DDX39BQ13838 428 aaKnown RBP10.18□□□□□ -0.78
COL4A6-202ENST00000372216 PPP1R13LQ8WUF5 828 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 POP1Q99575 1024 aaKnown RBP10.18□□□□□ -0.78
COL4A6-202ENST00000372216 RIOX1Q9H6W3 641 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 EXO5Q9H790 373 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 CSDE1O75534 798 aaKnown RBP10.18□□□□□ -0.78
COL4A6-202ENST00000372216 SLC2A3P11169 496 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 PCNAP12004 261 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 USP10Q14694 798 aaKnown RBP10.18□□□□□ -0.78
COL4A6-202ENST00000372216 STX19Q8N4C7 294 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 STRNO43815 780 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 POMCP01189 267 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 INSRRP14616 1297 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 APOBEC3HQ6NTF7 200 aaKnown RBP10.18□□□□□ -0.78
COL4A6-202ENST00000372216 C4orf19Q8IY42 314 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 SPATA4Q8NEY3 305 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 VTA1Q9NP79 307 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 IL17RBQ9NRM6 502 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 FBXO10Q9UK96 956 aa10.18□□□□□ -0.78
COL4A6-202ENST00000372216 ANKRD65E5RJM6 399 aa10.17□□□□□ -0.78
COL4A6-202ENST00000372216 SYNCRIPO60506 623 aaKnown RBP10.17□□□□□ -0.78
COL4A6-202ENST00000372216 PNMA6AP0CW24 399 aaPredicted RBP10.17□□□□□ -0.78
COL4A6-202ENST00000372216 VDRP11473 427 aa10.17□□□□□ -0.78
COL4A6-202ENST00000372216 CKBP12277 381 aa10.17□□□□□ -0.78
COL4A6-202ENST00000372216 MLNP12872 115 aa10.17□□□□□ -0.78
COL4A6-202ENST00000372216 TRPC1P48995 793 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms