RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 C9orf131Q5VYM1 1079 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 TTC13Q8NBP0 860 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 UBA3Q8TBC4 463 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 PRCCQ92733 491 aaPredicted RBP21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 EMID1Q96A84 441 aaPredicted RBP21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 FRMD8P1Q9BZ68 369 aaPredicted RBP21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 MLXIPLQ9NP71 852 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 ACTL7BQ9Y614 415 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 COL1A2P08123 1366 aa21.87■■□□□ 1.09
CCDC88B-203ENST00000359902 TSPAN1O60635 241 aa21.87■■□□□ 1.09
CCDC88B-203ENST00000359902 PDE4CQ08493 712 aa21.87■■□□□ 1.09
CCDC88B-203ENST00000359902 TAF5Q15542 800 aa21.87■■□□□ 1.09
CCDC88B-203ENST00000359902 RIBC1Q8N443 379 aaPredicted RBP21.87■■□□□ 1.09
CCDC88B-203ENST00000359902 KCTD6Q8NC69 237 aa21.87■■□□□ 1.09
CCDC88B-203ENST00000359902 CKAP2Q8WWK9 683 aa21.87■■□□□ 1.09
CCDC88B-203ENST00000359902 NLRP7Q8WX94 980 aa21.87■■□□□ 1.09
CCDC88B-203ENST00000359902 NSRP1Q9H0G5 558 aaKnown RBP21.87■■□□□ 1.09
CCDC88B-203ENST00000359902 DPP3Q9NY33 737 aa21.87■■□□□ 1.09
CCDC88B-203ENST00000359902 PNMA3Q9UL41 463 aa21.87■■□□□ 1.09
CCDC88B-203ENST00000359902 BARX2Q9UMQ3 279 aaPredicted RBP21.87■■□□□ 1.09
CCDC88B-203ENST00000359902 TCP11X1B4DZS4 312 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 EPHX2P34913 555 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 NDST1P52848 882 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 GDF10P55107 478 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 INCA1Q0VD86 236 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 ACAP1Q15027 740 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 ACAP3Q96P50 834 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 KATNBL1Q9H079 304 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 ITGA11Q9UKX5 1188 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 C2CD2Q9Y426 696 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 FARP1Q9Y4F1 1045 aaPredicted RBP21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 A0A1B0GUA9 196 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 EXOC1LA0A1B0GW35 172 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 H3BRB1 525 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 NDC80O14777 642 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 TRUB2O95900 331 aaKnown RBP21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 CYP3A5P20815 502 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 CCNA1P78396 465 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 RBP5P82980 135 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 TAX1BP1Q86VP1 789 aa21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 TUT1Q9H6E5 874 aaKnown RBP21.86■■□□□ 1.09
CCDC88B-203ENST00000359902 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 RNF8O76064 485 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 GHRP10912 638 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 TMED2Q15363 201 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 CENPUQ71F23 418 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 DPH6Q7L8W6 267 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 ZBED8Q8IZ13 594 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 GTF3C2Q8WUA4 911 aaPredicted RBP21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 SLC10A4Q96EP9 437 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 ADPGKQ9BRR6 497 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 USP18Q9UMW8 372 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 RASA4BC9J798 803 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 RASA4O43374 803 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 SNX3O60493 162 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 SCTRP47872 440 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 MARCH8Q5T0T0 291 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 FAM102AQ5T9C2 384 aaPredicted RBP21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 PCGF5Q86SE9 256 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 TDRPQ86YL5 185 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 GDAP1Q8TB36 358 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 HSPH1Q92598 858 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 L3MBTL3Q96JM7 780 aaPredicted RBP21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 ASNSD1Q9NWL6 643 aa21.85■■□□□ 1.09
CCDC88B-203ENST00000359902 STAU1O95793 577 aaKnown RBP21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 SNAI1O95863 264 aaPredicted RBP21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 CTCFP49711 727 aaPredicted RBP21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 ZNF143P52747 638 aaPredicted RBP21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 PDIA2Q13087 525 aaKnown RBP21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 RFX6Q8HWS3 928 aa21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 FGFR1OP2Q9NVK5 253 aa21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 PLXNA1Q9UIW2 1896 aa21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 GOLGA8MH3BSY2 632 aa21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 OAS1P00973 400 aaKnown RBP21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 HNRNPH1P31943 449 aaKnown RBP21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 RPL22P35268 128 aaKnown RBP21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 ADCY1Q08828 1119 aa21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 SH3PXD2AQ5TCZ1 1133 aa21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 TRNP1Q6NT89 227 aa21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 LCLAT1Q6UWP7 414 aa21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 ARHGEF18Q6ZSZ5 1173 aa21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 PPIL6Q8IXY8 311 aa21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 CPT1BQ92523 772 aa21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 PEBP4Q96S96 227 aa21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 VPS37BQ9H9H4 285 aa21.84■■□□□ 1.09
CCDC88B-203ENST00000359902 POC1B-GALNT4F8VUJ3 575 aa21.83■■□□□ 1.09
CCDC88B-203ENST00000359902 ATP2C2O75185 946 aa21.83■■□□□ 1.09
CCDC88B-203ENST00000359902 PCK1P35558 622 aa21.83■■□□□ 1.09
CCDC88B-203ENST00000359902 GAD2Q05329 585 aa21.83■■□□□ 1.09
CCDC88B-203ENST00000359902 ANKRD22Q5VYY1 191 aa21.83■■□□□ 1.09
CCDC88B-203ENST00000359902 DPY19L2Q6NUT2 758 aa21.83■■□□□ 1.09
CCDC88B-203ENST00000359902 TRABD2AQ86V40 505 aa21.83■■□□□ 1.09
CCDC88B-203ENST00000359902 UNC45BQ8IWX7 931 aa21.83■■□□□ 1.09
CCDC88B-203ENST00000359902 RSAD2Q8WXG1 361 aa21.83■■□□□ 1.09
CCDC88B-203ENST00000359902 NKIRAS1Q9NYS0 192 aa21.83■■□□□ 1.09
CCDC88B-203ENST00000359902 KIAA1257Q9ULG3 409 aa21.83■■□□□ 1.09
CCDC88B-203ENST00000359902 APOC4-APOC2K7ER74 178 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 PDHXO00330 501 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 PIK3R2O00459 728 aa21.83■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms