RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 PLCB3Q01970 1234 aa19.71■□□□□ 0.75
CLN3-204ENST00000357857 YWHAHQ04917 246 aaPredicted RBP19.71■□□□□ 0.75
CLN3-204ENST00000357857 INTS6LQ5JSJ4 861 aaKnown RBP19.71■□□□□ 0.75
CLN3-204ENST00000357857 PAQR9Q6ZVX9 377 aa19.71■□□□□ 0.75
CLN3-204ENST00000357857 MCRS1Q96EZ8 462 aa19.71■□□□□ 0.75
CLN3-204ENST00000357857 MCEEQ96PE7 176 aa19.71■□□□□ 0.75
CLN3-204ENST00000357857 IL23AQ9NPF7 189 aa19.71■□□□□ 0.75
CLN3-204ENST00000357857 MARCH5Q9NX47 278 aa19.71■□□□□ 0.75
CLN3-204ENST00000357857 LCMT1Q9UIC8 334 aa19.71■□□□□ 0.75
CLN3-204ENST00000357857 COL4A6Q14031 1691 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 PTPRDP23468 1912 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 MIF4GDA9UHW6 222 aaKnown RBP19.7■□□□□ 0.74
CLN3-204ENST00000357857 KCNK3O14649 394 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 SYN3O14994 580 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 PROSCO94903 275 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 GALTP07902 379 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 SLC1A1P43005 524 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 SLC8A3P57103 927 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 WDR5P61964 334 aaKnown RBP19.7■□□□□ 0.74
CLN3-204ENST00000357857 CKAP4Q07065 602 aaKnown RBP19.7■□□□□ 0.74
CLN3-204ENST00000357857 TMEM110Q86TL2 294 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 PCED1BQ96HM7 432 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 PBKQ96KB5 322 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 CYLDQ9NQC7 956 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 PRKAG2Q9UGJ0 569 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 IP6K2Q9UHH9 426 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 NLRC5Q86WI3 1866 aa19.7■□□□□ 0.74
CLN3-204ENST00000357857 PTPRSQ13332 1948 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 PIK3R2O00459 728 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 CES2O00748 559 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 XPO1O14980 1071 aaKnown RBP19.69■□□□□ 0.74
CLN3-204ENST00000357857 DDX3YO15523 660 aaKnown RBP19.69■□□□□ 0.74
CLN3-204ENST00000357857 BAIAP3O94812 1187 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 FAM200BP0CF97 657 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 KRT3P12035 628 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 NPR3P17342 541 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 PLA2G4AP47712 749 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 DEFB103AP81534 67 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 TSPY1Q01534 308 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 OR6B2Q6IFH4 312 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 FAM171BQ6P995 826 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 FAM183BPQ6ZVS7 135 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 FAM35AQ86V20 835 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 CPNE8Q86YQ8 564 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 CREG2Q8IUH2 290 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 LRRN4CLQ8ND94 238 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 OR10T2Q8NGX3 314 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 METTL5Q9NRN9 209 aaKnown RBP19.69■□□□□ 0.74
CLN3-204ENST00000357857 KRT82Q9NSB4 513 aa19.69■□□□□ 0.74
CLN3-204ENST00000357857 UQCRHLA0A096LP55 91 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 UQCRHP07919 91 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 ACADSBP45954 432 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 RPL34P49207 117 aaKnown RBP19.68■□□□□ 0.74
CLN3-204ENST00000357857 BCAR1P56945 870 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 FAM102AQ5T9C2 384 aaPredicted RBP19.68■□□□□ 0.74
CLN3-204ENST00000357857 UBL4BQ8N7F7 174 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.68■□□□□ 0.74
CLN3-204ENST00000357857 CD101Q93033 1021 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 MYLPFQ96A32 169 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 HSFY1Q96LI6 401 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 PKMYT1Q99640 499 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 PCDH10Q9P2E7 1040 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 SF3B1O75533 1304 aaKnown RBP eCLIP19.68■□□□□ 0.743e-9■■■■■ 164.7
CLN3-204ENST00000357857 OAZ2O95190 189 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 CTNNA2P26232 953 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 MAN1A1P33908 653 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 GTF2F1P35269 517 aaKnown RBP eCLIP19.68■□□□□ 0.74
CLN3-204ENST00000357857 PPIGQ13427 754 aaKnown RBP eCLIP19.68■□□□□ 0.746e-7■■□□□ 11.8
CLN3-204ENST00000357857 MAPRE1Q15691 268 aaKnown RBP19.68■□□□□ 0.74
CLN3-204ENST00000357857 CCDC181Q5TID7 509 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 FAM171A1Q5VUB5 890 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 FUT10Q6P4F1 479 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 CLEC20AQ6ZU45 233 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 JOSD2Q8TAC2 188 aa19.68■□□□□ 0.74
CLN3-204ENST00000357857 NT5C1B-RDH14C9J2C7 533 aa19.67■□□□□ 0.74
CLN3-204ENST00000357857 AP1G2O75843 785 aa19.67■□□□□ 0.74
CLN3-204ENST00000357857 GABBR2O75899 941 aa19.67■□□□□ 0.74
CLN3-204ENST00000357857 RFC1P35251 1148 aaPredicted RBP19.67■□□□□ 0.74
CLN3-204ENST00000357857 PBX3P40426 434 aa19.67■□□□□ 0.74
CLN3-204ENST00000357857 ELAVL2Q12926 359 aaKnown RBP19.67■□□□□ 0.74
CLN3-204ENST00000357857 VARS2Q5ST30 1063 aaKnown RBP19.67■□□□□ 0.74
CLN3-204ENST00000357857 FAM117BQ6P1L5 589 aa19.67■□□□□ 0.74
CLN3-204ENST00000357857 PIGZQ86VD9 579 aa19.67■□□□□ 0.74
CLN3-204ENST00000357857 ZDHHC17Q8IUH5 632 aa19.67■□□□□ 0.74
CLN3-204ENST00000357857 ZNF689Q96CS4 500 aaPredicted RBP19.67■□□□□ 0.74
CLN3-204ENST00000357857 SMARCD1Q96GM5 515 aa19.67■□□□□ 0.74
CLN3-204ENST00000357857 TMEM209Q96SK2 561 aa19.67■□□□□ 0.74
CLN3-204ENST00000357857 GPR62Q9BZJ7 368 aa19.67■□□□□ 0.74
CLN3-204ENST00000357857 CWH43Q9H720 699 aa19.67■□□□□ 0.74
CLN3-204ENST00000357857 RNF14Q9UBS8 474 aa19.67■□□□□ 0.74
CLN3-204ENST00000357857 CCDC66A2RUB6 948 aa19.66■□□□□ 0.74
CLN3-204ENST00000357857 CTAGE15A4D2H0 777 aa19.66■□□□□ 0.74
CLN3-204ENST00000357857 PDE2AO00408 941 aaPredicted RBP19.66■□□□□ 0.74
CLN3-204ENST00000357857 PAPSS1O43252 624 aaPredicted RBP19.66■□□□□ 0.74
CLN3-204ENST00000357857 TADA3O75528 432 aa19.66■□□□□ 0.74
CLN3-204ENST00000357857 BEST1O76090 585 aa19.66■□□□□ 0.74
CLN3-204ENST00000357857 CTAGE8P0CG41 777 aa19.66■□□□□ 0.74
CLN3-204ENST00000357857 CTNNA1P35221 906 aaKnown RBP19.66■□□□□ 0.74
CLN3-204ENST00000357857 PAFAH1B1P43034 410 aa19.66■□□□□ 0.74
CLN3-204ENST00000357857 ALDH7A1P49419 539 aaKnown RBP19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms