RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 CASP10Q92851 521 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 SPATA17Q96L03 361 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 NIF3L1Q9GZT8 377 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 ETAA1Q9NY74 926 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 ATXN8OSP0DMR3 200 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 TBL3Q12788 808 aaKnown RBP20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 THEM5Q8N1Q8 247 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 KCTD17Q8N5Z5 321 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 BBS2Q9BXC9 721 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 TRIM54Q9BYV2 358 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 INTS13Q9NVM9 706 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 GGA2Q9UJY4 613 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 KCNJ2P63252 427 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 ZNF235Q14590 738 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 TCP10LQ8TDR4 215 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 PAIP1Q9H074 479 aaKnown RBP20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 ARMCX1Q9P291 453 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 SOX13Q9UN79 622 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 ADGRA3Q8IWK6 1321 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 A0A087X0B3 334 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 CES2O00748 559 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 PATL1Q86TB9 770 aaKnown RBP20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 NSMCE4AQ9NXX6 385 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 DCDC2Q9UHG0 476 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 PIK3CDO00329 1044 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 ATP4AP20648 1035 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 STAT5BP51692 787 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 SNRPFP62306 86 aaKnown RBP20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 KIZQ2M2Z5 673 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 KBTBD12Q3ZCT8 623 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 BOLA3Q53S33 107 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 FAM162AQ96A26 154 aa20.27■□□□□ 0.84
CCDC88B-202ENST00000356786 JCADQ9P266 1359 aa20.27■□□□□ 0.83
CCDC88B-202ENST00000356786 FAM205AQ6ZU69 1335 aa20.27■□□□□ 0.83
CCDC88B-202ENST00000356786 CAMTA2O94983 1202 aa20.27■□□□□ 0.83
CCDC88B-202ENST00000356786 RALBP11234 206 aa20.27■□□□□ 0.83
CCDC88B-202ENST00000356786 PTK2BQ14289 1009 aa20.27■□□□□ 0.83
CCDC88B-202ENST00000356786 KRT72Q14CN4 511 aa20.27■□□□□ 0.83
CCDC88B-202ENST00000356786 DENND1BQ6P3S1 775 aa20.27■□□□□ 0.83
CCDC88B-202ENST00000356786 CBWD2Q8IUF1 395 aa20.27■□□□□ 0.83
CCDC88B-202ENST00000356786 CYP39A1Q9NYL5 469 aa20.27■□□□□ 0.83
CCDC88B-202ENST00000356786 PRR12Q9ULL5 1215 aa20.27■□□□□ 0.83
CCDC88B-202ENST00000356786 TBC1D12O60347 775 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 TSPY1Q01534 308 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 EARS2Q5JPH6 523 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 GDPD5Q8WTR4 605 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 DCUN1D5Q9BTE7 237 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 APOA4P06727 396 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 RBP5P82980 135 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 BMPR2Q13873 1038 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 RIT2Q99578 217 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 FAM192AQ9GZU8 254 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 RPL10AP62906 217 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 NFIXQ14938 502 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 NT5DC3Q86UY8 548 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 CD302Q8IX05 232 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 FAM49BQ9NUQ9 324 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 FAM32AQ9Y421 112 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 MEGF6O75095 1541 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 SERPINI2O75830 405 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 SMNDC1O75940 238 aaKnown RBP eCLIP20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 PROSCO94903 275 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 GIT2Q14161 759 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 PKN1Q16512 942 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 UBA3Q8TBC4 463 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 NYAP2Q9P242 653 aa20.26■□□□□ 0.83
CCDC88B-202ENST00000356786 PSMD3O43242 534 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 VPS72Q15906 364 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 KCTD21Q4G0X4 260 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 ERMARDQ5T6L9 678 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 SEL1L3Q68CR1 1132 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 EXD1Q8NHP7 514 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 TMEM79Q9BSE2 394 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 LRRC4BQ9NT99 713 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 PYGMP11217 842 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 GRK2P25098 689 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 ATP1A4Q13733 1029 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 EIF1ADQ8N9N8 165 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 SCFD2Q8WU76 684 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 MASTLQ96GX5 879 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 CBWD1Q9BRT8 395 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 TARS2Q9BW92 718 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 TMEM161AQ9NX61 479 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 FER1L4A9Z1Z3 1794 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 SRRM3A6NNA2 597 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 EEF2KO00418 725 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 CUL2Q13617 745 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 SEC23AQ15436 765 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 BTBD8Q5XKL5 378 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 POU5F2Q8N7G0 328 aa20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 OXNAD1Q96HP4 312 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-202ENST00000356786 RARAP10276 462 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 TGM2P21980 687 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 PKN2Q16513 984 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 HEATR4Q86WZ0 1026 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 NINJ2Q9NZG7 142 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 MSH4O15457 936 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 EXTL3O43909 919 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 TCHHL1Q5QJ38 904 aaPredicted RBP20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 PDPK2PQ6A1A2 396 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms