RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 HMGA1P17096 107 aaKnown RBP12.06□□□□□ -0.48
RTN3-204ENST00000354497 SMTNP53814 917 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 FAM160A1Q05DH4 1040 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 MAPK7Q13164 816 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 SEMA3BQ13214 749 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 ZNF268Q14587 947 aaPredicted RBP12.06□□□□□ -0.48
RTN3-204ENST00000354497 ZBTB6Q15916 424 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 EML3Q32P44 896 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 JADE1Q6IE81 842 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 ZPBP2Q6X784 338 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 EFCAB13Q8IY85 973 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 DCP1BQ8IZD4 617 aaKnown RBP12.06□□□□□ -0.48
RTN3-204ENST00000354497 CNPY4Q8N129 248 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 DEFB119Q8N690 84 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 WHAMMQ8TF30 809 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 C2orf15Q8WU43 125 aaKnown RBP12.06□□□□□ -0.48
RTN3-204ENST00000354497 CYP2S1Q96SQ9 504 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 HAPLN2Q9GZV7 340 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 DSEQ9UL01 958 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 PCDHB5Q9Y5E4 795 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 TRAV19A0A0A6YYK7 116 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 C2orf72A6NCS6 295 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 KLF8O95600 359 aaPredicted RBP12.05□□□□□ -0.48
RTN3-204ENST00000354497 NFATC1O95644 943 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 CSH1P0DML2 217 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 CSH2P0DML3 217 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 ITPKAP23677 461 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 LIG4P49917 911 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 GFPT1Q06210 699 aaPredicted RBP12.05□□□□□ -0.48
RTN3-204ENST00000354497 USP4Q13107 963 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 GNL2Q13823 731 aaKnown RBP12.05□□□□□ -0.48
RTN3-204ENST00000354497 ZNF77Q15935 545 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 ENOX2Q16206 610 aaKnown RBP12.05□□□□□ -0.48
RTN3-204ENST00000354497 CRY1Q16526 586 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 ZNF423Q2M1K9 1284 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 TTC38Q5R3I4 469 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 SPATA1Q5VX52 437 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 C9orf57Q5W0N0 161 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 RINT1Q6NUQ1 792 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 LRRTM3Q86VH5 581 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 ALLCQ8N6M5 410 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 OR2I1PQ8NGU4 316 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 SH3RF2Q8TEC5 729 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 HMGB4Q8WW32 186 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 LRIG1Q96JA1 1093 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 FNBP1Q96RU3 617 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 CCDC86Q9H6F5 360 aaKnown RBP12.05□□□□□ -0.48
RTN3-204ENST00000354497 C17orf75Q9HAS0 396 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 POLMQ9NP87 494 aaPredicted RBP12.05□□□□□ -0.48
RTN3-204ENST00000354497 SLC6A14Q9UN76 642 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 ZKSCAN5Q9Y2L8 839 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 PCDHB9Q9Y5E1 797 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 NUP205Q92621 2012 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 THADAQ6YHU6 1953 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 ADAMTS20P59510 1910 aa12.05□□□□□ -0.48
RTN3-204ENST00000354497 PP2D1A8MPX8 630 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 K7EQS6 105 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 CLSTN1O94985 981 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 CYP11A1P05108 521 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 NFICP08651 508 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 MAPTP10636 758 aaKnown RBP12.04□□□□□ -0.48
RTN3-204ENST00000354497 PLS3P13797 630 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 P2RY2P41231 377 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 DPP6P42658 865 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 TMEM132DQ14C87 1099 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 ANKRD1Q15327 319 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 SYCP1Q15431 976 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 DDR2Q16832 855 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 KRT79Q5XKE5 535 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 WSCD1Q658N2 575 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 SLC23A3Q6PIS1 610 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 MINDY1Q8N5J2 469 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 TXNDC5Q8NBS9 432 aaKnown RBP12.04□□□□□ -0.48
RTN3-204ENST00000354497 TMEM161BQ8NDZ6 487 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 NSUN7Q8NE18 718 aaKnown RBP12.04□□□□□ -0.48
RTN3-204ENST00000354497 OLIG1Q8TAK6 271 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 SPIRE2Q8WWL2 714 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 SLC22A12Q96S37 553 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 RAB34Q9BZG1 259 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 LINC00597Q9H2U6 94 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 ZDHHC4Q9NPG8 344 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 UXTQ9UBK9 157 aaPredicted RBP12.04□□□□□ -0.48
RTN3-204ENST00000354497 NBEAQ8NFP9 2946 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 TSC2P49815 1807 aa12.04□□□□□ -0.48
RTN3-204ENST00000354497 DSPP15924 2871 aaKnown RBP12.03□□□□□ -0.48
RTN3-204ENST00000354497 TCRBV21S2A2A0A5A6 115 aa12.03□□□□□ -0.48
RTN3-204ENST00000354497 UPK3BL1B0FP48 263 aa12.03□□□□□ -0.48
RTN3-204ENST00000354497 UPK3BL2E5RIL1 263 aa12.03□□□□□ -0.48
RTN3-204ENST00000354497 HNRNPDLO14979 420 aaKnown RBP12.03□□□□□ -0.48
RTN3-204ENST00000354497 TADA3O75528 432 aa12.03□□□□□ -0.48
RTN3-204ENST00000354497 HNRNPLP14866 589 aaKnown RBP eCLIP12.03□□□□□ -0.482e-12■■■□□ 15.2
RTN3-204ENST00000354497 OPRD1P41143 372 aa12.03□□□□□ -0.48
RTN3-204ENST00000354497 TAF6P49848 677 aa12.03□□□□□ -0.48
RTN3-204ENST00000354497 TSPY1Q01534 308 aa12.03□□□□□ -0.48
RTN3-204ENST00000354497 RPL6Q02878 288 aaKnown RBP12.03□□□□□ -0.48
RTN3-204ENST00000354497 SMARCB1Q12824 385 aa12.03□□□□□ -0.48
RTN3-204ENST00000354497 BYSLQ13895 437 aaKnown RBP12.03□□□□□ -0.48
RTN3-204ENST00000354497 KCNB1Q14721 858 aa12.03□□□□□ -0.48
RTN3-204ENST00000354497 KYAT1Q16773 422 aa12.03□□□□□ -0.48
RTN3-204ENST00000354497 DUOXA1Q1HG43 343 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms