RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CDH8P55286 799 aa15.53■□□□□ 0.08
COL17A1-201ENST00000353479 NFE2Q16621 373 aaPredicted RBP15.53■□□□□ 0.08
COL17A1-201ENST00000353479 FSCBQ5H9T9 825 aa15.53■□□□□ 0.08
COL17A1-201ENST00000353479 ADAM2Q99965 735 aa15.53■□□□□ 0.08
COL17A1-201ENST00000353479 VCX3AQ9NNX9 186 aa15.53■□□□□ 0.08
COL17A1-201ENST00000353479 ZCCHC17Q9NP64 241 aaKnown RBP15.53■□□□□ 0.08
COL17A1-201ENST00000353479 AIPL1Q9NZN9 384 aa15.53■□□□□ 0.08
COL17A1-201ENST00000353479 NFASCO94856 1347 aa15.53■□□□□ 0.08
COL17A1-201ENST00000353479 SYF2O95926 243 aaKnown RBP15.53■□□□□ 0.08
COL17A1-201ENST00000353479 BTG3Q14201 252 aaPredicted RBP15.53■□□□□ 0.08
COL17A1-201ENST00000353479 FAM171A1Q5VUB5 890 aa15.53■□□□□ 0.08
COL17A1-201ENST00000353479 RXFP2Q8WXD0 754 aa15.53■□□□□ 0.08
COL17A1-201ENST00000353479 CASZ1Q86V15 1759 aa15.53■□□□□ 0.08
COL17A1-201ENST00000353479 SLC12A8A0AV02 714 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 GFAPP14136 432 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 ZNF200P98182 395 aaPredicted RBP15.52■□□□□ 0.08
COL17A1-201ENST00000353479 SERPINI1Q99574 410 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 APBA2Q99767 749 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 FAM96AQ9H5X1 160 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 ASTN2O75129 1339 aaPredicted RBP15.52■□□□□ 0.08
COL17A1-201ENST00000353479 LMO7Q8WWI1 1683 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 SPATA31C2B4DYI2 1134 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 PMPCBO75439 489 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 PTGER2P43116 358 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 MAGEA4P43358 317 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 CARSP49589 748 aaKnown RBP15.52■□□□□ 0.08
COL17A1-201ENST00000353479 GTF2H3Q13889 308 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 USP10Q14694 798 aaKnown RBP15.52■□□□□ 0.08
COL17A1-201ENST00000353479 LBRQ14739 615 aaKnown RBP15.52■□□□□ 0.08
COL17A1-201ENST00000353479 IL17AQ16552 155 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 KYNUQ16719 465 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 C3orf62Q6ZUJ4 267 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 RNF217Q8TC41 542 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.52■□□□□ 0.08
COL17A1-201ENST00000353479 PPP1R2P1Q96PQ5 205 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 HAUS8Q9BT25 410 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 PDGFDQ9GZP0 370 aaPredicted RBP15.52■□□□□ 0.08
COL17A1-201ENST00000353479 CYP4F11Q9HBI6 524 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 KIF3CO14782 793 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 FOXD4Q12950 439 aaPredicted RBP15.52■□□□□ 0.08
COL17A1-201ENST00000353479 SYTL3Q4VX76 610 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 ZNF606Q8WXB4 792 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.52■□□□□ 0.08
COL17A1-201ENST00000353479 RRP15Q9Y3B9 282 aaKnown RBP15.52■□□□□ 0.08
COL17A1-201ENST00000353479 ROBO1Q9Y6N7 1651 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 MROH7Q68CQ1 1323 aa15.52■□□□□ 0.08
COL17A1-201ENST00000353479 GMNCA6NCL1 334 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 SPECC1L-ADORA2AF8WAN1 911 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 OPHN1O60890 802 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 RECQL4O94761 1208 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 EPHB3P54753 998 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 DDIASQ8IXT1 998 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 OR2W6PQ8NHA6 318 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 PGLYRP2Q96PD5 576 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 EFHD1Q9BUP0 239 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 GPR63Q9BZJ6 419 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 LACRTQ9GZZ8 138 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 CPSF2Q9P2I0 782 aaKnown RBP15.52■□□□□ 0.07
COL17A1-201ENST00000353479 ZFP69BQ9UJL9 534 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 ZNF263O14978 683 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 USP2O75604 605 aaPredicted RBP15.52■□□□□ 0.07
COL17A1-201ENST00000353479 POLBP06746 335 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 UGP2Q16851 508 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 PPIL6Q8IXY8 311 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 CNPY3Q9BT09 278 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 USP18Q9UMW8 372 aa15.52■□□□□ 0.07
COL17A1-201ENST00000353479 LAMB3Q13751 1172 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 GAD1Q99259 594 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 AP4E1Q9UPM8 1137 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 PLA2G6O60733 806 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 ARFIP2P53365 341 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 TFDP3Q5H9I0 405 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 NAPEPLDQ6IQ20 393 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 SH3RF1Q7Z6J0 888 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 NRXN3Q9Y4C0 1643 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 XRN1Q8IZH2 1706 aaKnown RBP15.51■□□□□ 0.07
COL17A1-201ENST00000353479 E2F8A0AVK6 867 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 SPDYE5A6NIY4 337 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 AP5Z1O43299 807 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 SETSIPP0DME0 302 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 HSPA9P38646 679 aaKnown RBP15.51■□□□□ 0.07
COL17A1-201ENST00000353479 PDK2Q15119 407 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 CBWD6Q4V339 395 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 CBWD3Q5JTY5 395 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 CBWD5Q5RIA9 395 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 C4orf33Q8N1A6 199 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 EDEM1Q92611 657 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 TMEM134Q9H6X4 195 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 CDY2AQ9Y6F7 541 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 SLC8A1P32418 973 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 COBLL1Q53SF7 1204 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 DENND5BQ6ZUT9 1274 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 HIPK4Q8NE63 616 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 SENP1Q9P0U3 644 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 PSMC3IPQ9P2W1 217 aaPredicted RBP15.51■□□□□ 0.07
COL17A1-201ENST00000353479 TRIM33Q9UPN9 1127 aa15.51■□□□□ 0.07
COL17A1-201ENST00000353479 CDH16O75309 829 aa15.5■□□□□ 0.07
COL17A1-201ENST00000353479 CABYRO75952 493 aa15.5■□□□□ 0.07
COL17A1-201ENST00000353479 PROSCO94903 275 aa15.5■□□□□ 0.07
COL17A1-201ENST00000353479 CTCFP49711 727 aaPredicted RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms