RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CHD4Q14839 1912 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 GOLGA8QA0A0J9YX86 632 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 ABHD14A-ACY1A0A1B0GW23 586 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 GOLGA8OA6NCC3 632 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 GOLGA8NF8WBI6 632 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 TTI1O43156 1089 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 MMEP08473 750 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 KCNA4P22459 653 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 ARHGAP1Q07960 439 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 KCNK18Q7Z418 384 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 RAPGEF5Q92565 580 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 MRPS23Q9Y3D9 190 aaKnown RBP10.61□□□□□ -0.71
USP54-201ENST00000339859 MORC2Q9Y6X9 1032 aaPredicted RBP10.61□□□□□ -0.71
USP54-201ENST00000339859 IGF2BP3O00425 579 aaKnown RBP eCLIP10.61□□□□□ -0.71
USP54-201ENST00000339859 PSTPIP1O43586 416 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 HSPA1AP0DMV8 641 aaKnown RBP10.61□□□□□ -0.71
USP54-201ENST00000339859 HSPA1BP0DMV9 641 aaKnown RBP10.61□□□□□ -0.71
USP54-201ENST00000339859 RALBP11234 206 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 PTPN1P18031 435 aaKnown RBP10.61□□□□□ -0.71
USP54-201ENST00000339859 CCR1P32246 355 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 PSEN1P49768 467 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 KLK7P49862 253 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 TLE2Q04725 743 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 E2F4Q16254 413 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 SYTL3Q4VX76 610 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 ZC3H18Q86VM9 953 aaKnown RBP10.61□□□□□ -0.71
USP54-201ENST00000339859 CNPY4Q8N129 248 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 C11orf84Q9BUA3 381 aaPredicted RBP10.61□□□□□ -0.71
USP54-201ENST00000339859 AGPAT5Q9NUQ2 364 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 ERICH4A6NGS2 130 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 SNX2O60749 519 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 NFICP08651 508 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 CYP3A5P20815 502 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 MDM2Q00987 491 aaPredicted RBP10.61□□□□□ -0.71
USP54-201ENST00000339859 GTF3C4Q9UKN8 822 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 FOXN3O00409 490 aaPredicted RBP10.61□□□□□ -0.71
USP54-201ENST00000339859 KDM1AO60341 852 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 MT-ND3P03897 115 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 ZNF211Q13398 564 aaPredicted RBP10.61□□□□□ -0.71
USP54-201ENST00000339859 EPC2Q52LR7 807 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 FAM43BQ6ZT52 329 aaPredicted RBP10.61□□□□□ -0.71
USP54-201ENST00000339859 TTC8Q8TAM2 541 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 SNF8Q96H20 258 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 FRMD8P1Q9BZ68 369 aaPredicted RBP10.61□□□□□ -0.71
USP54-201ENST00000339859 SAYSD1Q9NPB0 183 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 KLHL11Q9NVR0 708 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.61□□□□□ -0.71
USP54-201ENST00000339859 FAM187AA6NFU0 413 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 EPHB2P29323 1055 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 ARL2P36404 184 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 WSCD1Q658N2 575 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 CCDC121Q6ZUS5 278 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 USP33Q8TEY7 942 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 SCUBE2Q9NQ36 999 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 ABCC13Q9NSE7 274 aa10.61□□□□□ -0.71
USP54-201ENST00000339859 CDC25CP30307 473 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 CBX1P83916 185 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 WHAMMQ8TF30 809 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 RABGGTAQ92696 567 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 ARHGEF26Q96DR7 871 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 TRIM54Q9BYV2 358 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 UBXN6Q9BZV1 441 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 CIB2O75838 187 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 LUC7L3O95232 432 aaKnown RBP10.6□□□□□ -0.71
USP54-201ENST00000339859 ARF4P18085 180 aaPredicted RBP10.6□□□□□ -0.71
USP54-201ENST00000339859 BDNFP23560 247 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 TWF1Q12792 350 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 GPS1Q13098 491 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 CLEC16AQ2KHT3 1053 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 NT5DC1Q5TFE4 455 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 NXNQ6DKJ4 435 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 MYLK4Q86YV6 388 aaPredicted RBP10.6□□□□□ -0.71
USP54-201ENST00000339859 LRRC52Q8N7C0 313 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 TNFRSF25Q93038 417 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 ZBED3Q96IU2 234 aaPredicted RBP10.6□□□□□ -0.71
USP54-201ENST00000339859 CORO1BQ9BR76 489 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 SLC7A5P2Q9GIP4 190 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 ADGRG1Q9Y653 693 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 RENBPP51606 427 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 ADIGQ0VDE8 80 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 TMED2Q15363 201 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 KLHL38Q2WGJ6 581 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 SLC2A14Q8TDB8 520 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 PAWRQ96IZ0 340 aaKnown RBP10.6□□□□□ -0.71
USP54-201ENST00000339859 PKNOX2Q96KN3 472 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 OSBPL9Q96SU4 736 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 FMO2Q99518 471 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 ABCF3Q9NUQ8 709 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 VPS28Q9UK41 221 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 HES2Q9Y543 173 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 FOXP2O15409 715 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 TSPAN1O60635 241 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 SARSP49591 514 aaKnown RBP10.6□□□□□ -0.71
USP54-201ENST00000339859 IGLV3-22A0A075B6J6 115 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 EXOC1LA0A1B0GW35 172 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 F5H423 210 aaPredicted RBP10.6□□□□□ -0.71
USP54-201ENST00000339859 B4GALT5O43286 388 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 CCDC130P13994 396 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 CCDC62Q6P9F0 684 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 TBC1D19Q8N5T2 526 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms