RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 SOWAHBA6NEL2 793 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 C19orf81C9J6K1 198 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 ACTN1P12814 892 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 CDH2P19022 906 aaPredicted RBP5.87□□□□□ -1.47
CSDE1-202ENST00000339438 PON1P27169 355 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 TRPC1P48995 793 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 MARCKSL1P49006 195 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 RPL26P61254 145 aaKnown RBP5.87□□□□□ -1.47
CSDE1-202ENST00000339438 CD300CQ08708 224 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 ZNF211Q13398 564 aaPredicted RBP5.87□□□□□ -1.47
CSDE1-202ENST00000339438 CTTNQ14247 550 aaKnown RBP5.87□□□□□ -1.47
CSDE1-202ENST00000339438 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.87□□□□□ -1.47
CSDE1-202ENST00000339438 CFAP157Q5JU67 520 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 TRABD2AQ86V40 505 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 SFR1Q86XK3 245 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 RELL1Q8IUW5 271 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 OGFOD1Q8N543 542 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 CD101Q93033 1021 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 MCOLN1Q9GZU1 580 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 CCDC113Q9H0I3 377 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 LUC7LQ9NQ29 371 aaKnown RBP5.87□□□□□ -1.47
CSDE1-202ENST00000339438 SLC38A7Q9NVC3 462 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 SERPINB13Q9UIV8 391 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 SPEGQ15772 3267 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 GDF11O95390 407 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 OXSR1O95747 527 aaPredicted RBP5.87□□□□□ -1.47
CSDE1-202ENST00000339438 INHBBP09529 407 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 PLCB3Q01970 1234 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 TLR1Q15399 786 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 CCDC6Q16204 474 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 TMEM266Q2M3C6 531 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 SYCP2LQ5T4T6 812 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 RIPOR1Q6ZS17 1223 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 NET1Q7Z628 596 aaPredicted RBP5.87□□□□□ -1.47
CSDE1-202ENST00000339438 LRRC47Q8N1G4 583 aaKnown RBP5.87□□□□□ -1.47
CSDE1-202ENST00000339438 MARVELD2Q8N4S9 558 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 DCPSQ96C86 337 aaKnown RBP5.87□□□□□ -1.47
CSDE1-202ENST00000339438 RANBP9Q96S59 729 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 GPR88Q9GZN0 384 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 TPK1Q9H3S4 243 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 PSTPIP2Q9H939 334 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 SLC7A8Q9UHI5 535 aa5.87□□□□□ -1.47
CSDE1-202ENST00000339438 EML5Q05BV3 1969 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 EVPLQ92817 2033 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 FUOMA2VDF0 154 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 FAM47DPA6NHR8 397 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 PODXLO00592 558 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 MEIS2O14770 477 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 CASQ2O14958 399 aaPredicted RBP5.86□□□□□ -1.47
CSDE1-202ENST00000339438 LSM1O15116 133 aaKnown RBP5.86□□□□□ -1.47
CSDE1-202ENST00000339438 DENRO43583 198 aaKnown RBP5.86□□□□□ -1.47
CSDE1-202ENST00000339438 ATG7O95352 703 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 ACSL3O95573 720 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 CHRNA3P32297 505 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 MYBPC1Q00872 1141 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 CTBSQ01459 385 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 TRIM32Q13049 653 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 PPP2R5EQ16537 467 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 PFKFB3Q16875 520 aaPredicted RBP5.86□□□□□ -1.47
CSDE1-202ENST00000339438 DEPDC1Q5TB30 811 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 TMC7Q7Z402 723 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 PPM1KQ8N3J5 372 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 SLC35G2Q8TBE7 412 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 KRT35Q92764 455 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 DDX12PQ92771 950 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 ARHGEF26Q96DR7 871 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 RUNDC3BQ96NL0 473 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 PNMA5Q96PV4 448 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 UIMC1Q96RL1 719 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 HEPHQ9BQS7 1158 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.86□□□□□ -1.47
CSDE1-202ENST00000339438 RNF41Q9H4P4 317 aaPredicted RBP5.86□□□□□ -1.47
CSDE1-202ENST00000339438 GPAMQ9HCL2 828 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 UBN1Q9NPG3 1134 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 NINJ2Q9NZG7 142 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 NOX1Q9Y5S8 564 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 SYNGAP1Q96PV0 1343 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.86□□□□□ -1.47
CSDE1-202ENST00000339438 PDHXO00330 501 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 SPTLC1O15269 473 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 DGKIO75912 1065 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 GAS8O95995 478 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 FUCA1P04066 466 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 DLDP09622 509 aaKnown RBP5.86□□□□□ -1.47
CSDE1-202ENST00000339438 OSBPP22059 807 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 NFKBIAP25963 317 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 ITGB8P26012 769 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 RPA3P35244 121 aaPredicted RBP5.86□□□□□ -1.47
CSDE1-202ENST00000339438 CPOXP36551 454 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 RPL5P46777 297 aaKnown RBP5.86□□□□□ -1.47
CSDE1-202ENST00000339438 STT3AP46977 705 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 CHN2P52757 468 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 GALCP54803 685 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 VCPP55072 806 aaKnown RBP5.86□□□□□ -1.47
CSDE1-202ENST00000339438 HADHBP55084 474 aaKnown RBP5.86□□□□□ -1.47
CSDE1-202ENST00000339438 RPS3AP61247 264 aaKnown RBP5.86□□□□□ -1.47
CSDE1-202ENST00000339438 ARID5AQ03989 594 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 GRB10Q13322 594 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 RAPGEF1Q13905 1077 aa5.86□□□□□ -1.47
CSDE1-202ENST00000339438 TMEM179Q6ZVK1 233 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms