RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 METTL5Q9NRN9 209 aaKnown RBP16.3■□□□□ 0.2
LIMS1-202ENST00000338045 RNF216Q9NWF9 866 aaPredicted RBP16.3■□□□□ 0.2
LIMS1-202ENST00000338045 CCDC151A5D8V7 595 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 F8VP50 259 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 KRIT1O00522 736 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 DDHD2O94830 711 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 ACAT1P24752 427 aaKnown RBP16.29■□□□□ 0.2
LIMS1-202ENST00000338045 ADORA2BP29275 332 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 PLA2G4AP47712 749 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 GJA8P48165 433 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 RGS7P49802 495 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 SNX16P57768 344 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 BRD3Q15059 726 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 PKN2Q16513 984 aaKnown RBP16.29■□□□□ 0.2
LIMS1-202ENST00000338045 LONRF2Q1L5Z9 754 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 TCTN1Q2MV58 587 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 SEL1L2Q5TEA6 688 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 DAB2IPQ5VWQ8 1189 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 OLFML1Q6UWY5 402 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 FAM183BPQ6ZVS7 135 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 PAQR9Q6ZVX9 377 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 ZNF280BQ86YH2 543 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 ZDHHC17Q8IUH5 632 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 COLGALT2Q8IYK4 626 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 ANKLE1Q8NAG6 615 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 RSPH1Q8WYR4 309 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 RUBCNQ92622 972 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 HSFY1Q96LI6 401 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 SYT15Q9BQS2 421 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 PLVAPQ9BX97 442 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 AP1M1Q9BXS5 423 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 CRTAC1Q9NQ79 661 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 TBC1D13Q9NVG8 400 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 ARGLU1Q9NWB6 273 aaPredicted RBP16.29■□□□□ 0.2
LIMS1-202ENST00000338045 DSEQ9UL01 958 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 CDH9Q9ULB4 789 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 TIMM13Q9Y5L4 95 aaPredicted RBP16.29■□□□□ 0.2
LIMS1-202ENST00000338045 TET1Q8NFU7 2136 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 PCSK1P29120 753 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 BRCC3P46736 316 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 CLCN6P51797 869 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 PLCB3Q01970 1234 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 ACAP1Q15027 740 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 FAM102AQ5T9C2 384 aaPredicted RBP16.29■□□□□ 0.2
LIMS1-202ENST00000338045 CC2D1AQ6P1N0 951 aaPredicted RBP16.29■□□□□ 0.2
LIMS1-202ENST00000338045 KATNAL2Q8IYT4 538 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 DIS3LQ8TF46 1054 aaKnown RBP16.29■□□□□ 0.2
LIMS1-202ENST00000338045 SCLYQ96I15 445 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 RTP3Q9BQQ7 232 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 DUSP16Q9BY84 665 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 TBX21Q9UL17 535 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 TSC2P49815 1807 aa16.29■□□□□ 0.2
LIMS1-202ENST00000338045 ARHGEF37A1IGU5 675 aa16.28■□□□□ 0.2
LIMS1-202ENST00000338045 XPO1O14980 1071 aaKnown RBP16.28■□□□□ 0.2
LIMS1-202ENST00000338045 PAPSS1O43252 624 aaPredicted RBP16.28■□□□□ 0.2
LIMS1-202ENST00000338045 ITGB1P05556 798 aa16.28■□□□□ 0.2
LIMS1-202ENST00000338045 TYMPP19971 482 aa16.28■□□□□ 0.2
LIMS1-202ENST00000338045 PSMA2P25787 234 aa16.28■□□□□ 0.2
LIMS1-202ENST00000338045 SCNN1AP37088 669 aa16.28■□□□□ 0.2
LIMS1-202ENST00000338045 ACADSBP45954 432 aa16.28■□□□□ 0.2
LIMS1-202ENST00000338045 VSNL1P62760 191 aa16.28■□□□□ 0.2
LIMS1-202ENST00000338045 CCDC142Q17RM4 750 aa16.28■□□□□ 0.2
LIMS1-202ENST00000338045 PAN2Q504Q3 1202 aaKnown RBP16.28■□□□□ 0.2
LIMS1-202ENST00000338045 OR6B2Q6IFH4 312 aa16.28■□□□□ 0.2
LIMS1-202ENST00000338045 C8orf74Q6P047 294 aa16.28■□□□□ 0.2
LIMS1-202ENST00000338045 SLC13A5Q86YT5 568 aaPredicted RBP16.28■□□□□ 0.2
LIMS1-202ENST00000338045 PIWIL1Q96J94 861 aaKnown RBP16.28■□□□□ 0.2
LIMS1-202ENST00000338045 KRT12Q99456 494 aa16.28■□□□□ 0.2
LIMS1-202ENST00000338045 USTQ9Y2C2 406 aa16.28■□□□□ 0.2
LIMS1-202ENST00000338045 NR2E1Q9Y466 385 aa16.28■□□□□ 0.2
LIMS1-202ENST00000338045 PCDHB7Q9Y5E2 793 aa16.28■□□□□ 0.2
LIMS1-202ENST00000338045 TTC3P53804 2025 aa16.27■□□□□ 0.2
LIMS1-202ENST00000338045 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.27■□□□□ 0.2
LIMS1-202ENST00000338045 C2CD4BA6NLJ0 364 aa16.27■□□□□ 0.2
LIMS1-202ENST00000338045 I3L4J1 428 aa16.27■□□□□ 0.2
LIMS1-202ENST00000338045 NPR3P17342 541 aa16.27■□□□□ 0.2
LIMS1-202ENST00000338045 MCM3P25205 808 aa16.27■□□□□ 0.2
LIMS1-202ENST00000338045 SLC6A3Q01959 620 aa16.27■□□□□ 0.2
LIMS1-202ENST00000338045 PPP2R5EQ16537 467 aa16.27■□□□□ 0.2
LIMS1-202ENST00000338045 MDH1BQ5I0G3 518 aa16.27■□□□□ 0.2
LIMS1-202ENST00000338045 ARFGAP1Q8N6T3 406 aa16.27■□□□□ 0.2
LIMS1-202ENST00000338045 EMC1Q8N766 993 aa16.27■□□□□ 0.2
LIMS1-202ENST00000338045 HDAC7Q8WUI4 952 aa16.27■□□□□ 0.2
LIMS1-202ENST00000338045 KHSRPQ92945 711 aaKnown RBP eCLIP16.27■□□□□ 0.2
LIMS1-202ENST00000338045 ACBD6Q9BR61 282 aa16.27■□□□□ 0.2
LIMS1-202ENST00000338045 B3GNT5Q9BYG0 378 aa16.27■□□□□ 0.2
LIMS1-202ENST00000338045 DMGDHQ9UI17 866 aaKnown RBP16.27■□□□□ 0.2
LIMS1-202ENST00000338045 F8W810 466 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 PIK3R2O00459 728 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 FSCN2O14926 492 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 SART1O43290 800 aaKnown RBP16.27■□□□□ 0.19
LIMS1-202ENST00000338045 TCF4P15884 667 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 ZNF143P52747 638 aaPredicted RBP16.27■□□□□ 0.19
LIMS1-202ENST00000338045 CCL23P55773 120 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 TRNP1Q6NT89 227 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 POLNQ7Z5Q5 900 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 METTL23Q86XA0 190 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 ZDHHC14Q8IZN3 488 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 EXD1Q8NHP7 514 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 MYCBPAPQ8TBZ2 947 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms