RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ERVK-7P63135 1459 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 FYNP06241 537 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 ERVK-10P10266 1014 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 TGM2P21980 687 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 ACADSBP45954 432 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 ORC2Q13416 577 aaPredicted RBP13.09□□□□□ -0.31
SDC3-201ENST00000336798 CRYMQ14894 314 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 ATP6V0D2Q8N8Y2 350 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 APPL1Q9UKG1 709 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 SNX8Q9Y5X2 465 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 A0A1W2PQC6 194 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 EXTL3O43909 919 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 SNRPAP09012 282 aaKnown RBP13.09□□□□□ -0.31
SDC3-201ENST00000336798 FDX1P10109 184 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 TRIM32Q13049 653 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 E4F1Q66K89 784 aaPredicted RBP13.09□□□□□ -0.31
SDC3-201ENST00000336798 JAMLQ86YT9 394 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 MYOZ2Q9NPC6 264 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 PAPOLBQ9NRJ5 636 aaKnown RBP13.09□□□□□ -0.31
SDC3-201ENST00000336798 CDHR2Q9BYE9 1310 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 DLGAP3O95886 979 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 TAF6P49848 677 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 DNAL1Q4LDG9 190 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 USP39Q53GS9 565 aaKnown RBP13.09□□□□□ -0.31
SDC3-201ENST00000336798 RNF180Q86T96 592 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 DDI1Q8WTU0 396 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 CASP10Q92851 521 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 FBXO32Q969P5 355 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 E2F7Q96AV8 911 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 CIPCQ9C0C6 399 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 IARS2Q9NSE4 1012 aaKnown RBP13.09□□□□□ -0.31
SDC3-201ENST00000336798 PADI4Q9UM07 663 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 F5H5T6 163 aa13.08□□□□□ -0.31
SDC3-201ENST00000336798 MAGEB2O15479 319 aa13.08□□□□□ -0.31
SDC3-201ENST00000336798 CAPN1P07384 714 aa13.08□□□□□ -0.31
SDC3-201ENST00000336798 RBP3P10745 1247 aa13.08□□□□□ -0.31
SDC3-201ENST00000336798 CDC42EP1Q00587 391 aa13.08□□□□□ -0.31
SDC3-201ENST00000336798 EFHC1Q5JVL4 640 aa13.08□□□□□ -0.31
SDC3-201ENST00000336798 TRMT2AQ8IZ69 625 aaKnown RBP13.08□□□□□ -0.31
SDC3-201ENST00000336798 MXRA8Q9BRK3 442 aa13.08□□□□□ -0.31
SDC3-201ENST00000336798 CDC42BPGQ6DT37 1551 aa13.08□□□□□ -0.31
SDC3-201ENST00000336798 C2orf81A6NN90 581 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 B3GAT3O94766 335 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 CKMP06732 381 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 ABCB1P08183 1280 aaPredicted RBP13.08□□□□□ -0.32
SDC3-201ENST00000336798 TARSP26639 723 aaKnown RBP13.08□□□□□ -0.32
SDC3-201ENST00000336798 GUCA1AP43080 201 aaPredicted RBP13.08□□□□□ -0.32
SDC3-201ENST00000336798 SLC11A2P49281 568 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 CTCFP49711 727 aaPredicted RBP13.08□□□□□ -0.32
SDC3-201ENST00000336798 STARD3Q14849 445 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 HDDC2Q7Z4H3 204 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 ZNF786Q8N393 782 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 KRT35Q92764 455 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 KCNB2Q92953 911 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 TMEM169Q96HH4 297 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 KCNK16Q96T55 309 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 YME1L1Q96TA2 773 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 PHF20Q9BVI0 1012 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 ADGBQ8N7X0 1667 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 KDM5CP41229 1560 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 C19orf81C9J6K1 198 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 SOAT2O75908 522 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 FNTAP49354 379 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 EFEMP1Q12805 493 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 PDIA5Q14554 519 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 CCDC103Q8IW40 242 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 FEZF2Q8TBJ5 459 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.08□□□□□ -0.321e-6■■■■■ 61.7
SDC3-201ENST00000336798 TRIM8Q9BZR9 551 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 USP1O94782 785 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 PCDH8O95206 1070 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 ACADMP11310 421 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 ALDH9A1P49189 494 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 CASP4P49662 377 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 DPYDQ12882 1025 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 STRIP1Q5VSL9 837 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 CENPLQ8N0S6 344 aaPredicted RBP13.08□□□□□ -0.32
SDC3-201ENST00000336798 STAMBPL1Q96FJ0 436 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 SEC16BQ96JE7 1060 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 FAM111AQ96PZ2 611 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 STN1Q9H668 368 aaKnown RBP13.08□□□□□ -0.32
SDC3-201ENST00000336798 RSAD1Q9HA92 442 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 SENP2Q9HC62 589 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 GPRC5CQ9NQ84 441 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.08□□□□□ -0.32
SDC3-201ENST00000336798 UBP1Q9NZI7 540 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 RGS2P41220 211 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 CMTM5Q96DZ9 223 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 MED8Q96G25 268 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 CCT8L2Q96SF2 557 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 KCNH7Q9NS40 1196 aa13.08□□□□□ -0.32
SDC3-201ENST00000336798 EIF3LQ9Y262 564 aaKnown RBP13.08□□□□□ -0.32
SDC3-201ENST00000336798 NBPF26B4DH59 902 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 ADRA2BP18089 450 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 RFC5P40937 340 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 NCKAP1LP55160 1127 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 NBPF15Q8N660 670 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 CCDC134Q9H6E4 229 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 TMEM8AQ9HCN3 771 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 OLFML3Q9NRN5 406 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms