RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ALG6Q9Y672 507 aa15.75■□□□□ 0.11
CCDC88C-202ENST00000334448 FNDC1Q4ZHG4 1894 aaPredicted RBP15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 MYBPHLA2RUH7 354 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 OR6C75A6NL08 312 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 MYO1FO00160 1098 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 ENC1O14682 589 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 TBC1D4O60343 1298 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 PROSCO94903 275 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 FTCDO95954 541 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 FAM200BP0CF97 657 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 SLC8A3P57103 927 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 HTRA4P83105 476 aaPredicted RBP15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 RPS6KA1Q15418 735 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 PCED1BQ96HM7 432 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 OSBPL9Q96SU4 736 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 LPIN3Q9BQK8 851 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 HTATIP2Q9BUP3 242 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 ZCWPW1Q9H0M4 648 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 RNF14Q9UBS8 474 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 AMFRQ9UKV5 643 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 ALPK3Q96L96 1907 aa15.74■□□□□ 0.11
CCDC88C-202ENST00000334448 E5RJQ4 531 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 RIOK3O14730 519 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 GABBR2O75899 941 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 LAG3P18627 525 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 CTNNA2P26232 953 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 ADORA2BP29275 332 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 C2CD6Q53TS8 623 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 VARS2Q5ST30 1063 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 ZNF280DQ6N043 979 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 LLGL2Q6P1M3 1020 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 OLFML1Q6UWY5 402 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 CLEC20AQ6ZU45 233 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 ZNF572Q7Z3I7 529 aaPredicted RBP15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 GPR65Q8IYL9 337 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 MYLPFQ96A32 169 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 SMARCD1Q96GM5 515 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 FUBP3Q96I24 572 aaKnown RBP eCLIP15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 GPR62Q9BZJ7 368 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 SYNCQ9H7C4 482 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 HCSTQ9UBK5 93 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 TJP2Q9UDY2 1190 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 CHORDC1Q9UHD1 332 aaPredicted RBP15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 IP6K2Q9UHH9 426 aa15.73■□□□□ 0.11
CCDC88C-202ENST00000334448 TULP2O00295 520 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 DDX3YO15523 660 aaKnown RBP15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 NCK2O43639 380 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 UPP2O95045 317 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 FGBP02675 491 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 ACRP10323 421 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 KRT3P12035 628 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 COMTP21964 271 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 CTNNA1P35221 906 aaKnown RBP15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 ALDH7A1P49419 539 aaKnown RBP15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 ITIH3Q06033 890 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 SMARCB1Q12824 385 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 ACAP1Q15027 740 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 NFE2Q16621 373 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 CCDC142Q17RM4 750 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 CFAP221Q4G0U5 840 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 RAB41Q5JT25 222 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 TMEM240Q5SV17 173 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 CYP4A22Q5TCH4 519 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 FAM171A1Q5VUB5 890 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 C4orf50Q6ZRC1 276 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 SLC26A9Q7LBE3 791 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 TMEM173Q86WV6 379 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 DCP1BQ8IZD4 617 aaKnown RBP15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 SLC39A11Q8N1S5 342 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 SCML4Q8N228 414 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 BCL7CQ8WUZ0 217 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 HERVK_113Q902F9 699 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 BADQ92934 168 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 IGSF21Q96ID5 467 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 PBKQ96KB5 322 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 SELENOOQ9BVL4 669 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 TRIM7Q9C029 511 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 CARD9Q9H257 536 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 GOLPH3Q9H4A6 298 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 KRT82Q9NSB4 513 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 STK39Q9UEW8 545 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 TMEM59LQ9UK28 342 aa15.72■□□□□ 0.11
CCDC88C-202ENST00000334448 CCDC66A2RUB6 948 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 H7C4K7 107 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 DPYSL4O14531 572 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 PAPSS1O43252 624 aaPredicted RBP15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 GJB5O95377 273 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 GTF2F1P35269 517 aaKnown RBP eCLIP15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 PEX5P50542 639 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 RPL7AP62424 266 aaKnown RBP15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 ZNF252P-AS1Q0IIN9 211 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 PIGHQ14442 188 aaPredicted RBP15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 MESDQ14696 234 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 LRRC38Q5VT99 294 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 DCUN1D2Q6PH85 259 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 KCNT2Q6UVM3 1135 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 FAM183BPQ6ZVS7 135 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 ANKS3Q6ZW76 656 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 ZNF365Q70YC5 407 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms