RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 UPF3AQ9H1J1 476 aaKnown RBP13.76□□□□□ -0.21
CPNE1-201ENST00000317677 CNOT10Q9H9A5 744 aaKnown RBP13.76□□□□□ -0.21
CPNE1-201ENST00000317677 AVENQ9NQS1 362 aaPredicted RBP13.76□□□□□ -0.21
CPNE1-201ENST00000317677 HMGXB4Q9UGU5 601 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 FAM153AQ9UHL3 310 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 LRRC42Q9Y546 428 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 C17orf102A2RUQ5 167 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 PYGLP06737 847 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 POLR2BP30876 1174 aaKnown RBP13.76□□□□□ -0.21
CPNE1-201ENST00000317677 GRK4P32298 578 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 PEX5P50542 639 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 MRPS35P82673 323 aaKnown RBP13.76□□□□□ -0.21
CPNE1-201ENST00000317677 TMEM132DQ14C87 1099 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 DCAF4L1Q3SXM0 396 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 UBXN11Q5T124 520 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 HHATQ5VTY9 493 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 SLC27A1Q6PCB7 646 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 PIGWQ7Z7B1 504 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 SH3TC2Q8TF17 1288 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 C11orf70Q9BRQ4 267 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 ADPGKQ9BRR6 497 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 VRTNQ9H8Y1 702 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 RNF19AQ9NV58 838 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 UVRAGQ9P2Y5 699 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 NFU1Q9UMS0 254 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 PLAAQ9Y263 795 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 C2CD2Q9Y426 696 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 NR2E1Q9Y466 385 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 PCDHGA4Q9Y5G9 962 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 HTTP42858 3142 aa13.76□□□□□ -0.21
CPNE1-201ENST00000317677 LRRD1A4D1F6 860 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 PPEF2O14830 753 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 GLI1P08151 1106 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 ITGA4P13612 1032 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 NQO1P15559 274 aaKnown RBP13.75□□□□□ -0.21
CPNE1-201ENST00000317677 CACNB2Q08289 660 aaPredicted RBP13.75□□□□□ -0.21
CPNE1-201ENST00000317677 ZNF211Q13398 564 aaPredicted RBP13.75□□□□□ -0.21
CPNE1-201ENST00000317677 DYNC1I2Q13409 638 aaKnown RBP13.75□□□□□ -0.21
CPNE1-201ENST00000317677 ORC1Q13415 861 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 CUL3Q13618 768 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 KYAT1Q16773 422 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 KCTD19Q17RG1 926 aaPredicted RBP13.75□□□□□ -0.21
CPNE1-201ENST00000317677 WDR72Q3MJ13 1102 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 ZNF667Q5HYK9 610 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 NUGGCQ68CJ6 796 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 CXCL17Q6UXB2 119 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 TRIM72Q6ZMU5 477 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 APBB1IPQ7Z5R6 666 aaPredicted RBP13.75□□□□□ -0.21
CPNE1-201ENST00000317677 PHF13Q86YI8 300 aaPredicted RBP13.75□□□□□ -0.21
CPNE1-201ENST00000317677 WDTC1Q8N5D0 677 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 SLAIN1Q8ND83 568 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 CHMP6Q96FZ7 201 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 SNX27Q96L92 541 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.75□□□□□ -0.214e-13■■■■■ 56.2
CPNE1-201ENST00000317677 KATNAL1Q9BW62 490 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 NXF3Q9H4D5 531 aaKnown RBP13.75□□□□□ -0.21
CPNE1-201ENST00000317677 WDR35Q9P2L0 1181 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 DNAH12Q6ZR08 3092 aa13.75□□□□□ -0.21
CPNE1-201ENST00000317677 E7ENQ6 273 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 ZSCAN9O15535 394 aaPredicted RBP13.74□□□□□ -0.21
CPNE1-201ENST00000317677 ADAMTS4O75173 837 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 WFS1O76024 890 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 GJB6O95452 261 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 NSFP46459 744 aaKnown RBP13.74□□□□□ -0.21
CPNE1-201ENST00000317677 RAD23BP54727 409 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 CDC42EP1Q00587 391 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 ZBTB6Q15916 424 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 ANKRD20A2Q5SQ80 823 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 ANKRD20A1Q5TYW2 823 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 ANKRD20A3Q5VUR7 823 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 NAF1Q96HR8 494 aaKnown RBP13.74□□□□□ -0.21
CPNE1-201ENST00000317677 PLEKHG4BQ96PX9 1271 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 RPS6KC1Q96S38 1066 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 KRT12Q99456 494 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 AP1M1Q9BXS5 423 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 OSBPL1AQ9BXW6 950 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 ELOVL4Q9GZR5 314 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 DPP3Q9NY33 737 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 TTC7AQ9ULT0 858 aaPredicted RBP13.74□□□□□ -0.21
CPNE1-201ENST00000317677 AGAP1Q9UPQ3 857 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 DPPA5A6NC42 116 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 ZSCAN5CA6NGD5 496 aaPredicted RBP13.74□□□□□ -0.21
CPNE1-201ENST00000317677 PGRMC1O00264 195 aaKnown RBP13.74□□□□□ -0.21
CPNE1-201ENST00000317677 CCND3P30281 292 aaPredicted RBP13.74□□□□□ -0.21
CPNE1-201ENST00000317677 HPDP32754 393 aaPredicted RBP13.74□□□□□ -0.21
CPNE1-201ENST00000317677 NKX3-2P78367 333 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 GNASQ5JWF2 1037 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 ERMARDQ5T6L9 678 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 MFSD14CQ5VZR4 134 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 GDF6Q6KF10 455 aaPredicted RBP13.74□□□□□ -0.21
CPNE1-201ENST00000317677 NOTUMQ6P988 496 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 ALKAL1Q6UXT8 129 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 C7orf31Q8N865 590 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 SLC4A11Q8NBS3 891 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 KIF12Q96FN5 646 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 CARD9Q9H257 536 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 RNF39Q9H2S5 420 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 EPB41L5Q9HCM4 733 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 CTNNAL1Q9UBT7 734 aa13.74□□□□□ -0.21
CPNE1-201ENST00000317677 TUBGCP4Q9UGJ1 667 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms