RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 CHP1Q99653 195 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 HCFC2Q9Y5Z7 792 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 PLXNA3P51805 1871 aa19.26■□□□□ 0.67
HMGA1-201ENST00000311487 M0QYV0 167 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 O00370 1275 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 RFPL2O75678 378 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 AP1G2O75843 785 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 GLUD1P00367 558 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 CHRNB2P17787 502 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 GRIK1P39086 918 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 KLHL30Q0D2K2 578 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 IFRD2Q12894 506 aaPredicted RBP19.25■□□□□ 0.67
HMGA1-201ENST00000311487 SLC7A14Q8TBB6 771 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 SPATA18Q8TC71 538 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 GIPC2Q8TF65 315 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 DDX1Q92499 740 aaKnown RBP19.25■□□□□ 0.67
HMGA1-201ENST00000311487 GUCD1Q96NT3 240 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 LMAN2LQ9H0V9 348 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 PDCL3Q9H2J4 239 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 AIPL1Q9NZN9 384 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 NOCTQ9UK39 431 aaKnown RBP19.25■□□□□ 0.67
HMGA1-201ENST00000311487 PCDHB5Q9Y5E4 795 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 MYH10P35580 1976 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 ATF2P15336 505 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 HYAL1Q12794 435 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 C2CD6Q53TS8 623 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 ZNF571Q7Z3V5 609 aaPredicted RBP19.25■□□□□ 0.67
HMGA1-201ENST00000311487 C12orf76Q8N812 135 aaPredicted RBP19.25■□□□□ 0.67
HMGA1-201ENST00000311487 DNAJC7Q99615 494 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 EDEM3Q9BZQ6 932 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 MAN1C1Q9NR34 630 aa19.25■□□□□ 0.67
HMGA1-201ENST00000311487 TMEM265A0A087WTH1 108 aa19.24■□□□□ 0.67
HMGA1-201ENST00000311487 SPDYE4A6NLX3 237 aa19.24■□□□□ 0.67
HMGA1-201ENST00000311487 TMCO5BA8MYB1 307 aa19.24■□□□□ 0.67
HMGA1-201ENST00000311487 F8VP50 259 aa19.24■□□□□ 0.67
HMGA1-201ENST00000311487 FERP16591 822 aa19.24■□□□□ 0.67
HMGA1-201ENST00000311487 RGS7P49802 495 aa19.24■□□□□ 0.67
HMGA1-201ENST00000311487 DNTTIP2Q5QJE6 756 aaKnown RBP19.24■□□□□ 0.67
HMGA1-201ENST00000311487 HGSNATQ68CP4 663 aa19.24■□□□□ 0.67
HMGA1-201ENST00000311487 LILRA6Q6PI73 481 aa19.24■□□□□ 0.67
HMGA1-201ENST00000311487 CNGA4Q8IV77 575 aa19.24■□□□□ 0.67
HMGA1-201ENST00000311487 KREMEN2Q8NCW0 462 aa19.24■□□□□ 0.67
HMGA1-201ENST00000311487 SLC22A17Q8WUG5 538 aa19.24■□□□□ 0.67
HMGA1-201ENST00000311487 SECISBP2LQ93073 1101 aaKnown RBP19.24■□□□□ 0.67
HMGA1-201ENST00000311487 PCDHB18PQ96TA0 734 aa19.24■□□□□ 0.67
HMGA1-201ENST00000311487 GAS2L1Q99501 681 aaPredicted RBP19.24■□□□□ 0.67
HMGA1-201ENST00000311487 SMOQ99835 787 aa19.24■□□□□ 0.67
HMGA1-201ENST00000311487 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.24■□□□□ 0.67
HMGA1-201ENST00000311487 NSUN3Q9H649 340 aaKnown RBP19.24■□□□□ 0.67
HMGA1-201ENST00000311487 ARHGAP20Q9P2F6 1191 aa19.24■□□□□ 0.67
HMGA1-201ENST00000311487 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.24■□□□□ 0.67
HMGA1-201ENST00000311487 ELF1P32519 619 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 CREMQ03060 361 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 MTMR3Q13615 1198 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 NFE2Q16621 373 aaPredicted RBP19.23■□□□□ 0.67
HMGA1-201ENST00000311487 PDE12Q6L8Q7 609 aaKnown RBP19.23■□□□□ 0.67
HMGA1-201ENST00000311487 C4orf50Q6ZRC1 276 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 CPA5Q8WXQ8 436 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 HNRNPABQ99729 332 aaKnown RBP19.23■□□□□ 0.67
HMGA1-201ENST00000311487 AFF4Q9UHB7 1163 aaKnown RBP19.23■□□□□ 0.67
HMGA1-201ENST00000311487 CYTH4Q9UIA0 394 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 CDH22Q9UJ99 828 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 FMO1Q01740 532 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 PDE4CQ08493 712 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 MAPRE1Q15691 268 aaKnown RBP19.23■□□□□ 0.67
HMGA1-201ENST00000311487 CNGA2Q16280 664 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 DUSP6Q16828 381 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 TSR1Q2NL82 804 aaKnown RBP19.23■□□□□ 0.67
HMGA1-201ENST00000311487 CLEC20AQ6ZU45 233 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 PHLDB2Q86SQ0 1253 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 ZMIZ2Q8NF64 920 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 SLC30A5Q8TAD4 765 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 AGPAT1Q99943 283 aa19.23■□□□□ 0.67
HMGA1-201ENST00000311487 C8AP07357 584 aa19.22■□□□□ 0.67
HMGA1-201ENST00000311487 FAM200BP0CF97 657 aa19.22■□□□□ 0.67
HMGA1-201ENST00000311487 ATF6P18850 670 aa19.22■□□□□ 0.67
HMGA1-201ENST00000311487 BPIFB4P59827 614 aa19.22■□□□□ 0.67
HMGA1-201ENST00000311487 TWF1Q12792 350 aa19.22■□□□□ 0.67
HMGA1-201ENST00000311487 LCLAT1Q6UWP7 414 aa19.22■□□□□ 0.67
HMGA1-201ENST00000311487 GPRIN1Q7Z2K8 1008 aa19.22■□□□□ 0.67
HMGA1-201ENST00000311487 WDTC1Q8N5D0 677 aa19.22■□□□□ 0.67
HMGA1-201ENST00000311487 C1orf131Q8NDD1 294 aaKnown RBP19.22■□□□□ 0.67
HMGA1-201ENST00000311487 SMARCD1Q96GM5 515 aa19.22■□□□□ 0.67
HMGA1-201ENST00000311487 OXCT2Q9BYC2 517 aaPredicted RBP19.22■□□□□ 0.67
HMGA1-201ENST00000311487 HESX1Q9UBX0 185 aa19.22■□□□□ 0.67
HMGA1-201ENST00000311487 TJP2Q9UDY2 1190 aa19.22■□□□□ 0.67
HMGA1-201ENST00000311487 MYO6Q9UM54 1294 aa19.22■□□□□ 0.67
HMGA1-201ENST00000311487 CCL16O15467 120 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 EIF4A3P38919 411 aaKnown RBP19.21■□□□□ 0.67
HMGA1-201ENST00000311487 CDR2Q01850 454 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 DLX2Q07687 328 aaPredicted RBP19.21■□□□□ 0.67
HMGA1-201ENST00000311487 ARHGAP17Q68EM7 881 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 PMF1Q6P1K2 205 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 ANKRD52Q8NB46 1076 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 SCAMP5Q8TAC9 235 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 NDRG1Q92597 394 aaKnown RBP19.21■□□□□ 0.67
HMGA1-201ENST00000311487 IQCDQ96DY2 449 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 DUSP16Q9BY84 665 aa19.21■□□□□ 0.67
HMGA1-201ENST00000311487 FAM124BQ9H5Z6 455 aaPredicted RBP19.21■□□□□ 0.67
HMGA1-201ENST00000311487 ST7Q9NRC1 585 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms