RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 RBM15Q96T37 977 aaKnown RBP eCLIP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 NCOA5Q9HCD5 579 aaKnown RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 THAP1Q9NVV9 213 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 HACD1B0YJ81 288 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 SNX2O60749 519 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 MED26O95402 600 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 RBP1P09455 135 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 NCAM1P13591 858 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 ADD1P35611 737 aaKnown RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 ATXN3P54252 364 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 EFTUD2Q15029 972 aaKnown RBP eCLIP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 TCEAL5Q5H9L2 206 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 TRIM67Q6ZTA4 783 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 TMEM179Q6ZVK1 233 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 GET4Q7L5D6 327 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 FBXO11Q86XK2 927 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 FCGR1BQ92637 280 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 FAM84AQ96KN4 292 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 HERC5Q9UII4 1024 aaKnown RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 CSADQ9Y600 493 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 RIMS1Q86UR5 1692 aaKnown RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 CENPAP49450 140 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 LIG4P49917 911 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 DMC1Q14565 340 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 SNAP47Q5SQN1 464 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 TRAF7Q6Q0C0 670 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 SCUBE1Q8IWY4 988 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 IL17REQ8NFR9 667 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 SEPT1Q8WYJ6 367 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 SH3KBP1Q96B97 665 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 TUBGCP5Q96RT8 1024 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 ZBED2Q9BTP6 218 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 BDH2Q9BUT1 245 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 SLC25A23Q9BV35 468 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 NLRC4Q9NPP4 1024 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 CNOT11Q9UKZ1 510 aaKnown RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 MYRFQ9Y2G1 1151 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 TBL3Q12788 808 aaKnown RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 PDK4Q16654 411 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 TAF2Q6P1X5 1199 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 SCYL2Q6P3W7 929 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 SH2D3CQ8N5H7 860 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 CKAP2Q8WWK9 683 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 ERP27Q96DN0 273 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 RMDN3Q96TC7 470 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 GORASP1Q9BQQ3 440 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 FAM167BQ9BTA0 163 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 EBF2Q9HAK2 575 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 VPS54Q9P1Q0 977 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 STK39Q9UEW8 545 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 NAGPAQ9UK23 515 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 DTNAQ9Y4J8 743 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 RP1P56715 2156 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 K7ENM7 598 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 RPS8P62241 208 aaKnown RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 C2orf54Q08AI8 447 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 NFIAQ12857 509 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 E2F4Q16254 413 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 BSNDQ8WZ55 320 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 VPS33AQ96AX1 596 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 C7orf26Q96N11 449 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 TSEN34Q9BSV6 310 aaKnown RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 LRRC19Q9H756 370 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 MANSC1Q9H8J5 431 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 SMURF2Q9HAU4 748 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 ADAMTS1Q9UHI8 967 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 CHD1O14646 1710 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 TRIM13O60858 407 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 HMBSP08397 361 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 RALBP11234 206 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 PLS3P13797 630 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 HPCAP84074 193 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 MXD4Q14582 209 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 STXBP2Q15833 593 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 BORAQ6PGQ7 559 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 G2E3Q7L622 706 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 SH3BP5LQ7L8J4 393 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 PSTKQ8IV42 348 aaKnown RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 RASGEF1CQ8N431 466 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 ATP8B4Q8TF62 1192 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 ZKSCAN4Q969J2 545 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 SKA1Q96BD8 255 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 AGPAT1Q99943 283 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 UBE2OQ9C0C9 1292 aaKnown RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 METTL5Q9NRN9 209 aaKnown RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 NMRK1Q9NWW6 199 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 UBAP1Q9NZ09 502 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 CRNNQ9UBG3 495 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 DDX20Q9UHI6 824 aaKnown RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 LNPEPQ9UIQ6 1025 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 PCDHGB4Q9UN71 923 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 SF3B1O75533 1304 aaKnown RBP eCLIP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 NDUFB5O43674 189 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 CCNE2O96020 404 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 ERP29P30040 261 aaKnown RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 MVKQ03426 396 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 FOXD4Q12950 439 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 ITGB3BPQ13352 177 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 TMEM154Q6P9G4 183 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 PTF1AQ7RTS3 328 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms