RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 CPA5Q8WXQ8 436 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 GNB5O14775 395 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 ENTPD5O75356 428 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 SEL1L3Q68CR1 1132 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 EFCAB1Q9HAE3 211 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 SP110Q9HB58 689 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 A8MUI8 341 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 GRK3P35626 688 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 USP46P62068 366 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 VAC14Q08AM6 782 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 TMEM35BQ8NCS4 154 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 CCNKO75909 580 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 ATG7O95352 703 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 TRAP1Q12931 704 aaKnown RBP12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 AGKQ53H12 422 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 RBM46Q8TBY0 533 aaKnown RBP12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 PNMA3Q9UL41 463 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 PNMA8BQ9ULN7 279 aaPredicted RBP12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 DGKBQ9Y6T7 804 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 PSAPP07602 524 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 ALOX5P09917 674 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 STX5Q13190 355 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 GPR107Q5VW38 600 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 RBM17Q96I25 401 aaKnown RBP12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 OSBPL3Q9H4L5 887 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 CCRL2O00421 344 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 RTN2O75298 545 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 NME3Q13232 169 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 SLC9A4Q6AI14 798 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 FNIP1Q8TF40 1166 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 FIG4Q92562 907 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 UBA2Q9UBT2 640 aaPredicted RBP12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 VAV3Q9UKW4 847 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 SYNPO2Q9UMS6 1093 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 NPATQ14207 1427 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 PLXNC1O60486 1568 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 CTTNBP2Q8WZ74 1663 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 WDR17Q8IZU2 1322 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 MAGI1Q96QZ7 1491 aaPredicted RBP12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 SPAG17Q6Q759 2223 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 TRAPPC3O43617 180 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 ENO2P09104 434 aaPredicted RBP12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 ACLYP53396 1101 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 MRPS22P82650 360 aaKnown RBP12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 C1DQ13901 141 aaKnown RBP12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 NLRP10Q86W26 655 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 OR8H3Q8N146 312 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 SLC9A8Q9Y2E8 581 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 ITIH6Q6UXX5 1313 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 NPHP3-ACAD11A0A0J9YXS1 232 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 INPP4BO15327 924 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 COILP38432 576 aaPredicted RBP12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 PHC1P78364 1004 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 LRRC24Q50LG9 513 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 TMEM26Q6ZUK4 368 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 COX4I2Q96KJ9 171 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 MCEEQ96PE7 176 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 COPS4Q9BT78 406 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 HEATR9A2RTY3 570 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 SDC4P31431 198 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 GYG1P46976 350 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 ITGA7Q13683 1181 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 SLC5A9Q2M3M2 681 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 RNF148Q8N7C7 305 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 SYTL5Q8TDW5 730 aaPredicted RBP12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 ASB12Q8WXK4 309 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 CAVIN3Q969G5 261 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 KIF28PB7ZC32 967 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 PDE8AO60658 829 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 P4HBP07237 508 aaKnown RBP12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 COMTP21964 271 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 ABL2P42684 1182 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 PKNOX1P55347 436 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 PDPK2PQ6A1A2 396 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 PTPRN2Q92932 1015 aa12.17□□□□□ -0.46
SHROOM3-201ENST00000296043 DCAF8L1A6NGE4 600 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 DDX5P17844 614 aaKnown RBP12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 HOXA13P31271 388 aaPredicted RBP12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 ZNF844Q08AG5 666 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 SMTNL2Q2TAL5 461 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 SLFN13Q68D06 897 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 EYA1Q99502 592 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 AGPAT1Q99943 283 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 DPPA5A6NC42 116 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 RPL5P46777 297 aaKnown RBP12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 NR1H2P55055 460 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 SLC18A3Q16572 532 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 PIGUQ9H490 435 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 ALDH1A3P47895 512 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 LDLRAP1Q5SW96 308 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 NUAK2Q9H093 628 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 AK5Q9Y6K8 562 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 CYP26A1O43174 497 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 RRM2P31350 389 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 GALNT18Q6P9A2 607 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 LRRC17Q8N6Y2 441 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 RNASE11Q8TAA1 199 aaKnown RBP12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 CCDC115Q96NT0 180 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 POTECB2RU33 542 aa12.16□□□□□ -0.46
SHROOM3-201ENST00000296043 ARF4P18085 180 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms