RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 ARHGEF17Q96PE2 2063 aaPredicted RBP9.67□□□□□ -0.86
CUX1-201ENST00000292535 CRTAMO95727 393 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 FCGRTP55899 365 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 TBC1D10CQ8IV04 446 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 TMEM117Q9H0C3 514 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 FMO5P49326 533 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 RGS7P49802 495 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 SGO1Q5FBB7 561 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 E2F7Q96AV8 911 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 ABI2Q9NYB9 513 aaPredicted RBP9.67□□□□□ -0.86
CUX1-201ENST00000292535 TMCC3Q9ULS5 477 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.67□□□□□ -0.86
CUX1-201ENST00000292535 TMED10P49755 219 aaKnown RBP9.67□□□□□ -0.86
CUX1-201ENST00000292535 FAM83EQ2M2I3 478 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 ITIH6Q6UXX5 1313 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 GVINP1Q7Z2Y8 2422 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 SAC3D1A6NKF1 404 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 HMBSP08397 361 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 STX5Q13190 355 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 GOLGA7BQ2TAP0 167 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 OTOAQ7RTW8 1153 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 NEDD1Q8NHV4 660 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 DNAJC9Q8WXX5 260 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 ADI1Q9BV57 179 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 SDR42E2A6NKP2 422 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 DDHD2O94830 711 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 SERPINB3P29508 390 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 MB21D2Q8IYB1 491 aaPredicted RBP9.67□□□□□ -0.86
CUX1-201ENST00000292535 SPIRE2Q8WWL2 714 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 APBB2Q92870 758 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 WDCPQ9H6R7 721 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 A0A1W2PQC6 194 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 ERN1O75460 977 aaKnown RBP9.67□□□□□ -0.86
CUX1-201ENST00000292535 NFIAQ12857 509 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 SMAD1Q15797 465 aaKnown RBP9.67□□□□□ -0.86
CUX1-201ENST00000292535 MOSPD2Q8NHP6 518 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 SENP2Q9HC62 589 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 NMRK2Q9NPI5 230 aa9.67□□□□□ -0.86
CUX1-201ENST00000292535 SLC25A27O95847 323 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 ZNF157P51786 506 aaPredicted RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 NKX1-1Q15270 411 aaPredicted RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 TRIM9Q9C026 710 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 AKAP7Q9P0M2 348 aaPredicted RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 RHOBTB1O94844 696 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 GRK4P32298 578 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 MANSC1Q9H8J5 431 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 MBL2P11226 248 aaPredicted RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 GTF2A2P52657 109 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 GPAT2Q6NUI2 795 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 FAM71DQ8N9W8 422 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 WDR41Q9HAD4 459 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 TTLL13PA6NNM8 815 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 TCN1P20061 433 aaPredicted RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 KCTD14Q9BQ13 255 aaPredicted RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 HPS4Q9NQG7 708 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 TRMT6Q9UJA5 497 aaKnown RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 ZMYND8Q9ULU4 1186 aaPredicted RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 SMIM22K7EJ46 135 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 IFRD1O00458 451 aaPredicted RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 NFIBO00712 420 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 CETPP11597 493 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 ITGALP20701 1170 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 TALDO1P37837 337 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 TRIM16LQ309B1 348 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 NLRP9Q7RTR0 991 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 C11orf74Q86VG3 221 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 CHST13Q8NET6 341 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 CHRM3P20309 590 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 KCNA3P22001 575 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 FEN1P39748 380 aaKnown RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 EPHB3P54753 998 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 NECTIN1Q15223 517 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 SP8Q8IXZ3 490 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 C19orf18Q8NEA5 215 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 ZNF669Q96BR6 464 aaPredicted RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 POLR1DQ9Y2S0 133 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 RAD54BQ9Y620 910 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 CENPLQ8N0S6 344 aaPredicted RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 CYP4Z2PQ8N1L4 340 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 OXER1Q8TDS5 423 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 VIPAS39Q9H9C1 493 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 BATF3Q9NR55 127 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.66□□□□□ -0.86
CUX1-201ENST00000292535 MGAT4DA6NG13 374 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 ASS1P00966 412 aaKnown RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 CYP2D6P10635 497 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 PEX5P50542 639 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 FAM45BPQ6NSW5 357 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 GPR141Q7Z602 305 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 GLT1D1Q96MS3 346 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 SPRTNQ9H040 489 aaPredicted RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 FANCEQ9HB96 536 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 A0A087WWV3 80 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 RPS6P62753 249 aaKnown RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 PHACTR4Q8IZ21 702 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 SPATA4Q8NEY3 305 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 USP33Q8TEY7 942 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 AHCYL2Q96HN2 611 aaKnown RBP9.66□□□□□ -0.86
CUX1-201ENST00000292535 NFKBIZQ9BYH8 718 aa9.66□□□□□ -0.86
CUX1-201ENST00000292535 ELP3Q9H9T3 547 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms