RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 FLOT2Q14254 428 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 PCSK7Q16549 785 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 FAM83EQ2M2I3 478 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 AASDHQ4L235 1098 aaPredicted RBP11.18□□□□□ -0.62
CD44-201ENST00000263398 THEMIS2Q5TEJ8 643 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 EFL1Q7Z2Z2 1120 aaKnown RBP11.18□□□□□ -0.62
CD44-201ENST00000263398 LRRN4CLQ8ND94 238 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 CNPY3Q9BT09 278 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 ADNPQ9H2P0 1102 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 TRIM45Q9H8W5 580 aaPredicted RBP11.18□□□□□ -0.62
CD44-201ENST00000263398 LATS2Q9NRM7 1088 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 MOSPD1Q9UJG1 213 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 HAO1Q9UJM8 370 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 RPS6KA5O75582 802 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 TGM2P21980 687 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 SERPINB10P48595 397 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 SPOCD1Q6ZMY3 1216 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 MFN1Q8IWA4 741 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 CLEC4FQ8N1N0 589 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 LZICQ8WZA0 190 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 PAFAH2Q99487 392 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 CD248Q9HCU0 757 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 TEKT2Q9UIF3 430 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 E2F8A0AVK6 867 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 SDR42E2A6NKP2 422 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 TRPC5OSA6NMA1 111 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 TMEM119Q4V9L6 283 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 LRRC8BQ6P9F7 803 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 SLC26A11Q86WA9 606 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 ACTL9Q8TC94 416 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 DCUN1D1Q96GG9 259 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 POP1Q99575 1024 aaKnown RBP11.17□□□□□ -0.62
CD44-201ENST00000263398 DCLRE1BQ9H816 532 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 COG4Q9H9E3 785 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 DPP3Q9NY33 737 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 DCDC2Q9UHG0 476 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 NWD1Q149M9 1564 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 ZSCAN5CA6NGD5 496 aaPredicted RBP11.17□□□□□ -0.62
CD44-201ENST00000263398 TADA2AO75478 443 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 CTSHP09668 335 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 DDX5P17844 614 aaKnown RBP11.17□□□□□ -0.62
CD44-201ENST00000263398 TCN1P20061 433 aaPredicted RBP11.17□□□□□ -0.62
CD44-201ENST00000263398 MAP4P27816 1152 aaKnown RBP11.17□□□□□ -0.62
CD44-201ENST00000263398 HOXD10P28358 340 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 GMPSP49915 693 aaPredicted RBP11.17□□□□□ -0.62
CD44-201ENST00000263398 C1QBPQ07021 282 aaKnown RBP11.17□□□□□ -0.62
CD44-201ENST00000263398 RCN1Q15293 331 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 CLEC16AQ2KHT3 1053 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 MPZL3Q6UWV2 235 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 GALNT4Q8N4A0 578 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 ZNF555Q8NEP9 628 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 BLOC1S4Q9NUP1 217 aa11.17□□□□□ -0.62
CD44-201ENST00000263398 ZC3H4Q9UPT8 1303 aaKnown RBP11.17□□□□□ -0.62
CD44-201ENST00000263398 TIMM44O43615 452 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 RGS4P49798 205 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 ERVK-9P63128 1117 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 PTK2BQ14289 1009 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 MTFR1Q15390 333 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 SPDYAQ5MJ70 313 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 PRAMEF18Q5VWM3 479 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 RRM2BQ7LG56 351 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 DCP1BQ8IZD4 617 aaKnown RBP11.16□□□□□ -0.62
CD44-201ENST00000263398 HDAC7Q8WUI4 952 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 DTNBP1Q96EV8 351 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 PDCD2LQ9BRP1 358 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 TMEM121Q9BTD3 319 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 DDIT4Q9NX09 232 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 SHOC2Q9UQ13 582 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 M0QYT0 321 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 UBOX5O94941 541 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 NPTXRO95502 500 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 PCNX4Q63HM2 1172 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 TMC3Q7Z5M5 1100 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 CREG2Q8IUH2 290 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 ABRAQ8N0Z2 381 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 SH3KBP1Q96B97 665 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 PCDH9Q9HC56 1237 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 CISHQ9NSE2 258 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 RIC8BQ9NVN3 520 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 IRAK4Q9NWZ3 460 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 LOC102724159A0A0B4J2E5 919 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 DDTLA6NHG4 134 aaPredicted RBP11.16□□□□□ -0.62
CD44-201ENST00000263398 DPYSL4O14531 572 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 APOA1P02647 267 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 IL1R1P14778 569 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 RARRES1P49788 294 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 DAB2P98082 770 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 KPNB1Q14974 876 aaKnown RBP11.16□□□□□ -0.62
CD44-201ENST00000263398 PWP2Q15269 919 aaKnown RBP11.16□□□□□ -0.62
CD44-201ENST00000263398 DGKDQ16760 1214 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 KBTBD12Q3ZCT8 623 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 IL31Q6EBC2 164 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 GLB1LQ6UWU2 654 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 SLC25A41Q8N5S1 370 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 AENQ8WTP8 325 aaKnown RBP11.16□□□□□ -0.62
CD44-201ENST00000263398 PDP2Q9P2J9 529 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 SPATA31A6Q5VVP1 1343 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 DDX3XO00571 662 aaKnown RBP eCLIP11.16□□□□□ -0.62
CD44-201ENST00000263398 SASH3O75995 380 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 F9P00740 461 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms