RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 FGFR1P11362 822 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 SERPINB3P29508 390 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 POLR2BP30876 1174 aaKnown RBP13.25□□□□□ -0.29
LIG1-201ENST00000263274 ELK3P41970 407 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 ZNF252P-AS1Q0IIN9 211 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 PIGHQ14442 188 aaPredicted RBP13.25□□□□□ -0.29
LIG1-201ENST00000263274 SUPT20HL1Q3ZLR7 823 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 BSPRYQ5W0U4 402 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 ASRGL1Q7L266 308 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 PPIL6Q8IXY8 311 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 PDCD7Q8N8D1 485 aaKnown RBP13.25□□□□□ -0.29
LIG1-201ENST00000263274 PPP1R14CQ8TAE6 165 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 STMN2Q93045 179 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 RILPQ96NA2 401 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 SENP1Q9P0U3 644 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 ZNRF3Q9ULT6 936 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 ACTL7BQ9Y614 415 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 SIPA1L1O43166 1804 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 FAM155BO75949 473 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 OATP04181 439 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 PYGBP11216 843 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 CDH6P55285 790 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 DUOXA2Q1HG44 320 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 CIAPIN1Q6FI81 312 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 RFWD3Q6PCD5 774 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 TRIM50Q86XT4 487 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 LMNTD2Q8IXW0 634 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 VCPIP1Q96JH7 1222 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 RNPEPL1Q9HAU8 725 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 PCDH9Q9HC56 1237 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.24□□□□□ -0.29
LIG1-201ENST00000263274 EDN1P05305 212 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 CDKN2BP42772 138 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 YARSP54577 528 aaKnown RBP13.24□□□□□ -0.29
LIG1-201ENST00000263274 TSNAXIP1Q2TAA8 658 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 FAM83AQ86UY5 434 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 DENND2DQ9H6A0 471 aaPredicted RBP13.24□□□□□ -0.29
LIG1-201ENST00000263274 RAB6BQ9NRW1 208 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 GPATCH2LQ9NWQ4 482 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 GREB1LQ9C091 1923 aaPredicted RBP13.24□□□□□ -0.29
LIG1-201ENST00000263274 SLX4Q8IY92 1834 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 KLHL33A6NCF5 533 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 ABHD2P08910 425 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 CALB2P22676 271 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 IL1R2P27930 398 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 FAAP100Q0VG06 881 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 C11orf91Q3C1V1 193 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 FAM102AQ5T9C2 384 aaPredicted RBP13.24□□□□□ -0.29
LIG1-201ENST00000263274 OR6B2Q6IFH4 312 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 C15orf39Q6ZRI6 1047 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 CPT1BQ92523 772 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 FOXP3Q9BZS1 431 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 NIF3L1Q9GZT8 377 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 DEFB129Q9H1M3 183 aa13.24□□□□□ -0.29
LIG1-201ENST00000263274 NGRNQ9NPE2 291 aaKnown RBP13.24□□□□□ -0.29
LIG1-201ENST00000263274 ZNF831Q5JPB2 1677 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 TBC1D12O60347 775 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 BAG2O95816 211 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 TNNC2P02585 160 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 PTP4A2Q12974 167 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 TNFAIP1Q13829 316 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 BMPR2Q13873 1038 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 STXBP2Q15833 593 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 KBTBD12Q3ZCT8 623 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 PPP6R3Q5H9R7 873 aaPredicted RBP13.23□□□□□ -0.29
LIG1-201ENST00000263274 ABHD15Q6UXT9 468 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 RTKN2Q8IZC4 609 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 STK32AQ8WU08 396 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 CDHR1Q96JP9 859 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 NRBP2Q9NSY0 501 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 SLC5A4Q9NY91 659 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 DDX56Q9NY93 547 aaKnown RBP13.23□□□□□ -0.29
LIG1-201ENST00000263274 PPARGC1AQ9UBK2 798 aaKnown RBP13.23□□□□□ -0.29
LIG1-201ENST00000263274 RABGEF1Q9UJ41 708 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 CLUHO75153 1309 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 TMEM63AO94886 807 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 DPEP1P16444 411 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 RGS7P49802 495 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 INHBEP58166 350 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 TMPRSS15P98073 1019 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 KDSRQ06136 332 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 GRIK3Q13003 919 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 KRT81Q14533 505 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 KLHL38Q2WGJ6 581 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 PTPN20Q4JDL3 420 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 PLEKHG4Q58EX7 1191 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 UBR3Q6ZT12 1888 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 TTC7BQ86TV6 843 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 DENND1AQ8TEH3 1009 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 TRAPPC12Q8WVT3 735 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 C10orf82Q8WW14 230 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 PTPRN2Q92932 1015 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 HEXIM2Q96MH2 286 aaKnown RBP13.23□□□□□ -0.29
LIG1-201ENST00000263274 MECRQ9BV79 373 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 ARL8BQ9NVJ2 186 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 SHOC2Q9UQ13 582 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 GINS2Q9Y248 185 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 A0A0B4J269 797 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 KBTBD13C9JR72 458 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 M0QYV0 167 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms