RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 LILRA6Q6PI73 481 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 ZNF571Q7Z3V5 609 aaPredicted RBP28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 ZNF677Q86XU0 584 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 AGPAT1Q99943 283 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 ABCB6Q9NP58 842 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 TMEM30AQ9NV96 361 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 ARHGAP20Q9P2F6 1191 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 MTCH2Q9Y6C9 303 aa28.87■■■□□ 2.21
CHMP4B-201ENST00000217402 PLXNA3P51805 1871 aa28.86■■■□□ 2.21
CHMP4B-201ENST00000217402 FAM170AA1A519 330 aa28.86■■■□□ 2.21
CHMP4B-201ENST00000217402 PRRG1O14668 218 aa28.86■■■□□ 2.21
CHMP4B-201ENST00000217402 EPCAMP16422 314 aa28.86■■■□□ 2.21
CHMP4B-201ENST00000217402 ELF1P32519 619 aa28.86■■■□□ 2.21
CHMP4B-201ENST00000217402 MEA1Q16626 185 aa28.86■■■□□ 2.21
CHMP4B-201ENST00000217402 SCN4BQ8IWT1 228 aa28.86■■■□□ 2.21
CHMP4B-201ENST00000217402 PANX2Q96RD6 677 aa28.86■■■□□ 2.21
CHMP4B-201ENST00000217402 GAS2L1Q99501 681 aaPredicted RBP28.86■■■□□ 2.21
CHMP4B-201ENST00000217402 IGFLR1Q9H665 355 aa28.86■■■□□ 2.21
CHMP4B-201ENST00000217402 LMCD1Q9NZU5 365 aa28.86■■■□□ 2.21
CHMP4B-201ENST00000217402 FBXW11Q9UKB1 542 aa28.86■■■□□ 2.21
CHMP4B-201ENST00000217402 SZT2Q5T011 3432 aa28.85■■■□□ 2.21
CHMP4B-201ENST00000217402 RBM10P98175 930 aaKnown RBP28.85■■■□□ 2.21
CHMP4B-201ENST00000217402 FMO1Q01740 532 aa28.85■■■□□ 2.21
CHMP4B-201ENST00000217402 GPR153Q6NV75 609 aa28.85■■■□□ 2.21
CHMP4B-201ENST00000217402 ANKRD52Q8NB46 1076 aa28.85■■■□□ 2.21
CHMP4B-201ENST00000217402 KREMEN2Q8NCW0 462 aa28.85■■■□□ 2.21
CHMP4B-201ENST00000217402 PCDHGC3Q9UN70 934 aa28.85■■■□□ 2.21
CHMP4B-201ENST00000217402 HCFC2Q9Y5Z7 792 aa28.85■■■□□ 2.21
CHMP4B-201ENST00000217402 BZW2Q9Y6E2 419 aaKnown RBP28.85■■■□□ 2.21
CHMP4B-201ENST00000217402 BEST1O76090 585 aa28.84■■■□□ 2.21
CHMP4B-201ENST00000217402 HAPLN1P10915 354 aaPredicted RBP28.84■■■□□ 2.21
CHMP4B-201ENST00000217402 NPR3P17342 541 aa28.84■■■□□ 2.21
CHMP4B-201ENST00000217402 GRIK1P39086 918 aa28.84■■■□□ 2.21
CHMP4B-201ENST00000217402 GPR15P49685 360 aa28.84■■■□□ 2.21
CHMP4B-201ENST00000217402 BCAT1P54687 386 aa28.84■■■□□ 2.21
CHMP4B-201ENST00000217402 MAP3K7CLP57077 242 aa28.84■■■□□ 2.21
CHMP4B-201ENST00000217402 CLEC20AQ6ZU45 233 aa28.84■■■□□ 2.21
CHMP4B-201ENST00000217402 SLC22A17Q8WUG5 538 aa28.84■■■□□ 2.21
CHMP4B-201ENST00000217402 SECISBP2LQ93073 1101 aaKnown RBP28.84■■■□□ 2.21
CHMP4B-201ENST00000217402 KCNK16Q96T55 309 aa28.84■■■□□ 2.21
CHMP4B-201ENST00000217402 CHP1Q99653 195 aa28.84■■■□□ 2.21
CHMP4B-201ENST00000217402 SMOQ99835 787 aa28.84■■■□□ 2.21
CHMP4B-201ENST00000217402 DUSP16Q9BY84 665 aa28.84■■■□□ 2.21
CHMP4B-201ENST00000217402 MAGEA11P43364 429 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 DDR2Q16832 855 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 MICALL1Q8N3F8 863 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 DEFB123Q8N688 67 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 SLC7A14Q8TBB6 771 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 SYT11Q9BT88 431 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 DMAP1Q9NPF5 467 aaPredicted RBP28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 MAN1C1Q9NR34 630 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 F8VP50 259 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 PDE4CQ08493 712 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 BST2Q10589 180 aaKnown RBP28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 HYAL1Q12794 435 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 PKDCCQ504Y2 493 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 LIN9Q5TKA1 542 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 SDHAF4Q5VUM1 108 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 VSTM1Q6UX27 236 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 TCEAL8Q8IYN2 117 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 CDCA3Q99618 268 aaPredicted RBP28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 YIPF1Q9Y548 306 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 PTPRDP23468 1912 aa28.83■■■□□ 2.21
CHMP4B-201ENST00000217402 TULP2O00295 520 aa28.82■■■□□ 2.2
CHMP4B-201ENST00000217402 PTMAP06454 111 aaKnown RBP28.82■■■□□ 2.2
CHMP4B-201ENST00000217402 TNFAIP3P21580 790 aa28.82■■■□□ 2.2
CHMP4B-201ENST00000217402 EIF4A3P38919 411 aaKnown RBP28.82■■■□□ 2.2
CHMP4B-201ENST00000217402 SLC8A3P57103 927 aa28.82■■■□□ 2.2
CHMP4B-201ENST00000217402 C1orf131Q8NDD1 294 aaKnown RBP28.82■■■□□ 2.2
CHMP4B-201ENST00000217402 ZMIZ2Q8NF64 920 aa28.82■■■□□ 2.2
CHMP4B-201ENST00000217402 OLIG1Q8TAK6 271 aa28.82■■■□□ 2.2
CHMP4B-201ENST00000217402 MYLIPQ8WY64 445 aa28.82■■■□□ 2.2
CHMP4B-201ENST00000217402 PCDHB18PQ96TA0 734 aa28.82■■■□□ 2.2
CHMP4B-201ENST00000217402 MAFFQ9ULX9 164 aa28.82■■■□□ 2.2
CHMP4B-201ENST00000217402 CEP83Q9Y592 693 aa28.82■■■□□ 2.2
CHMP4B-201ENST00000217402 INSL5Q9Y5Q6 135 aa28.82■■■□□ 2.2
CHMP4B-201ENST00000217402 C8AP07357 584 aa28.81■■■□□ 2.2
CHMP4B-201ENST00000217402 TUFMP49411 452 aaKnown RBP28.81■■■□□ 2.2
CHMP4B-201ENST00000217402 CCDC173Q0VFZ6 552 aa28.81■■■□□ 2.2
CHMP4B-201ENST00000217402 PRRC2BQ5JSZ5 2229 aaKnown RBP28.81■■■□□ 2.2
CHMP4B-201ENST00000217402 STKLD1Q8NE28 680 aa28.81■■■□□ 2.2
CHMP4B-201ENST00000217402 VN1R2Q8NFZ6 395 aa28.81■■■□□ 2.2
CHMP4B-201ENST00000217402 GPR152Q8TDT2 470 aa28.81■■■□□ 2.2
CHMP4B-201ENST00000217402 CDX2Q99626 313 aaPredicted RBP28.81■■■□□ 2.2
CHMP4B-201ENST00000217402 HSFX1Q9UBD0 423 aa28.81■■■□□ 2.2
CHMP4B-201ENST00000217402 TRIM66O15016 1216 aa28.8■■■□□ 2.2
CHMP4B-201ENST00000217402 SETSIPP0DME0 302 aa28.8■■■□□ 2.2
CHMP4B-201ENST00000217402 POU3F3P20264 500 aaPredicted RBP28.8■■■□□ 2.2
CHMP4B-201ENST00000217402 ANXA13P27216 316 aa28.8■■■□□ 2.2
CHMP4B-201ENST00000217402 GPD2P43304 727 aa28.8■■■□□ 2.2
CHMP4B-201ENST00000217402 CCDC149Q6ZUS6 474 aa28.8■■■□□ 2.2
CHMP4B-201ENST00000217402 DEF6Q9H4E7 631 aa28.8■■■□□ 2.2
CHMP4B-201ENST00000217402 NHEJ1Q9H9Q4 299 aaPredicted RBP28.8■■■□□ 2.2
CHMP4B-201ENST00000217402 CSNK1G1Q9HCP0 422 aa28.8■■■□□ 2.2
CHMP4B-201ENST00000217402 SPDYE4A6NLX3 237 aa28.8■■■□□ 2.2
CHMP4B-201ENST00000217402 ATF6P18850 670 aa28.8■■■□□ 2.2
CHMP4B-201ENST00000217402 CDK17Q00537 523 aa28.8■■■□□ 2.2
CHMP4B-201ENST00000217402 NAA35Q5VZE5 725 aa28.8■■■□□ 2.2
CHMP4B-201ENST00000217402 VPS36Q86VN1 386 aa28.8■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms