RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C PBI2P0CT04 75 aaKnown RBP-0.31□□□□□ -2.46
NIP1YMR309C RPS1BP23248 255 aaKnown RBP-0.31□□□□□ -2.46
NIP1YMR309C MRPL11P36521 249 aaPredicted RBP-0.31□□□□□ -2.46
NIP1YMR309C SFT2P38166 215 aa-0.31□□□□□ -2.46
NIP1YMR309C AIM4P38305 123 aaPredicted RBP-0.31□□□□□ -2.46
NIP1YMR309C YER181CP40097 107 aa-0.31□□□□□ -2.46
NIP1YMR309C YJL218WP40892 196 aaKnown RBP-0.31□□□□□ -2.46
NIP1YMR309C ICS3P47034 131 aa-0.31□□□□□ -2.46
NIP1YMR309C BRP1P53194 125 aa-0.31□□□□□ -2.46
NIP1YMR309C SOM1Q05676 74 aa-0.31□□□□□ -2.46
NIP1YMR309C YLR296WQ05898 108 aa-0.31□□□□□ -2.46
NIP1YMR309C YOL164W-AQ3E7A5 60 aa-0.31□□□□□ -2.46
NIP1YMR309C YRF1-6P53819 1859 aa-0.31□□□□□ -2.46
NIP1YMR309C UTP11P34247 250 aaPredicted RBP-0.32□□□□□ -2.46
NIP1YMR309C SRX1P36077 127 aa-0.32□□□□□ -2.46
NIP1YMR309C YEA6P39953 335 aa-0.32□□□□□ -2.46
NIP1YMR309C APQ12P40532 138 aa-0.32□□□□□ -2.46
NIP1YMR309C PHB1P40961 287 aa-0.32□□□□□ -2.46
NIP1YMR309C YPL067CQ02754 198 aa-0.32□□□□□ -2.46
NIP1YMR309C MRPL44P19956 98 aa-0.32□□□□□ -2.46
NIP1YMR309C BUB2P26448 306 aaPredicted RBP-0.32□□□□□ -2.46
NIP1YMR309C GSP1P32835 219 aaKnown RBP-0.32□□□□□ -2.46
NIP1YMR309C ARL3Q02804 198 aa-0.32□□□□□ -2.46
NIP1YMR309C COF1Q03048 143 aaKnown RBP-0.32□□□□□ -2.46
NIP1YMR309C YPR202WQ08993 238 aa-0.32□□□□□ -2.46
NIP1YMR309C YLR053CQ12026 108 aa-0.32□□□□□ -2.46
NIP1YMR309C OCA6Q12454 224 aa-0.32□□□□□ -2.46
NIP1YMR309C URB1P34241 1764 aaKnown RBP-0.32□□□□□ -2.46
NIP1YMR309C EGD2P38879 174 aaKnown RBP-0.33□□□□□ -2.46
NIP1YMR309C YCL001W-AP87012 153 aa-0.33□□□□□ -2.46
NIP1YMR309C YBR072C-AQ3E794 53 aa-0.33□□□□□ -2.46
NIP1YMR309C LSM1P47017 172 aaKnown RBP-0.33□□□□□ -2.46
NIP1YMR309C SNT2P53127 1403 aa-0.33□□□□□ -2.46
NIP1YMR309C YPK9Q12697 1472 aa-0.34□□□□□ -2.46
NIP1YMR309C RPS28BP0C0X0 67 aaKnown RBP-0.34□□□□□ -2.46
NIP1YMR309C RPL35AP0CX84 120 aaKnown RBP-0.34□□□□□ -2.46
NIP1YMR309C RPL35BP0CX85 120 aaKnown RBP-0.34□□□□□ -2.46
NIP1YMR309C HSP12P22943 109 aaKnown RBP-0.34□□□□□ -2.46
NIP1YMR309C SUA7P29055 345 aaPredicted RBP-0.34□□□□□ -2.46
NIP1YMR309C FIG1P38224 298 aa-0.34□□□□□ -2.46
NIP1YMR309C SPG1P50088 95 aa-0.34□□□□□ -2.46
NIP1YMR309C YNL190WP53872 204 aa-0.34□□□□□ -2.46
NIP1YMR309C LDB18Q07887 179 aa-0.34□□□□□ -2.46
NIP1YMR309C YGR240C-AQ3E786 66 aa-0.34□□□□□ -2.46
NIP1YMR309C RPS28AQ3E7X9 67 aaPredicted RBP-0.34□□□□□ -2.46
NIP1YMR309C HAP3P13434 144 aa-0.34□□□□□ -2.46
NIP1YMR309C VPS51P36116 164 aa-0.34□□□□□ -2.46
NIP1YMR309C LCL1Q02786 101 aa-0.34□□□□□ -2.46
NIP1YMR309C YOR385WQ08909 290 aa-0.34□□□□□ -2.46
NIP1YMR309C GTT2Q12390 233 aa-0.34□□□□□ -2.46
NIP1YMR309C ATX1P38636 73 aa-0.35□□□□□ -2.46
NIP1YMR309C YHR173CP38864 112 aa-0.35□□□□□ -2.46
NIP1YMR309C YIL163CP40448 117 aa-0.35□□□□□ -2.46
NIP1YMR309C LSM8P47093 109 aaKnown RBP-0.35□□□□□ -2.46
NIP1YMR309C YGR017WP53210 297 aa-0.35□□□□□ -2.46
NIP1YMR309C SDH7Q04401 133 aa-0.35□□□□□ -2.46
NIP1YMR309C SEC7P11075 2009 aaKnown RBP-0.35□□□□□ -2.47
NIP1YMR309C RTC6O14464 93 aa-0.35□□□□□ -2.47
NIP1YMR309C SUI1P32911 108 aaKnown RBP-0.35□□□□□ -2.47
NIP1YMR309C AIM18P38884 321 aa-0.35□□□□□ -2.47
NIP1YMR309C YGL149WP53116 101 aa-0.35□□□□□ -2.47
NIP1YMR309C EFG1Q3E705 233 aaKnown RBP-0.35□□□□□ -2.47
NIP1YMR309C PET20Q99373 253 aa-0.35□□□□□ -2.47
NIP1YMR309C QCR2P07257 368 aa-0.36□□□□□ -2.47
NIP1YMR309C PAU21P0CE86 164 aa-0.36□□□□□ -2.47
NIP1YMR309C PAU22P0CE87 164 aa-0.36□□□□□ -2.47
NIP1YMR309C QCR10P37299 77 aa-0.36□□□□□ -2.47
NIP1YMR309C FCF2Q12035 217 aaPredicted RBP-0.36□□□□□ -2.47
NIP1YMR309C RIM15P43565 1770 aa-0.36□□□□□ -2.47
NIP1YMR309C HHO1P53551 258 aa-0.36□□□□□ -2.47
NIP1YMR309C RAV2Q03956 351 aa-0.36□□□□□ -2.47
NIP1YMR309C POL2P21951 2222 aaKnown RBP-0.36□□□□□ -2.47
NIP1YMR309C RPL36BO14455 100 aaKnown RBP-0.37□□□□□ -2.47
NIP1YMR309C RPL36AP05745 100 aaPredicted RBP-0.37□□□□□ -2.47
NIP1YMR309C ARC19P33204 171 aaKnown RBP-0.37□□□□□ -2.47
NIP1YMR309C RPS1AP33442 255 aaKnown RBP-0.37□□□□□ -2.47
NIP1YMR309C PRS3P38689 320 aaKnown RBP-0.37□□□□□ -2.47
NIP1YMR309C YGR201CP42936 225 aa-0.37□□□□□ -2.47
NIP1YMR309C GIM5Q04493 163 aa-0.37□□□□□ -2.47
NIP1YMR309C YGL041C-BQ3E750 60 aa-0.37□□□□□ -2.47
NIP1YMR309C HSP10P38910 106 aa-0.37□□□□□ -2.47
NIP1YMR309C ATG38Q05789 226 aaKnown RBP-0.37□□□□□ -2.47
NIP1YMR309C ENV10Q99382 181 aa-0.37□□□□□ -2.47
NIP1YMR309C CCW14O13547 238 aa-0.38□□□□□ -2.47
NIP1YMR309C DER1P38307 211 aa-0.38□□□□□ -2.47
NIP1YMR309C EFM5P53200 248 aaKnown RBP-0.38□□□□□ -2.47
NIP1YMR309C MRPS12P53732 153 aa-0.38□□□□□ -2.47
NIP1YMR309C ECM5Q03214 1411 aa-0.38□□□□□ -2.47
NIP1YMR309C TRM732Q03496 1420 aa-0.38□□□□□ -2.47
NIP1YMR309C RPL22AP05749 121 aaKnown RBP-0.38□□□□□ -2.47
NIP1YMR309C YJL197C-AP0C5P0 93 aa-0.38□□□□□ -2.47
NIP1YMR309C NSL1Q12143 216 aa-0.38□□□□□ -2.47
NIP1YMR309C CMC2Q3E7A4 109 aa-0.38□□□□□ -2.47
NIP1YMR309C RPA12P32529 125 aaKnown RBP-0.39□□□□□ -2.47
NIP1YMR309C YDR366CP87287 132 aa-0.39□□□□□ -2.47
NIP1YMR309C ADK1P07170 222 aaKnown RBP-0.39□□□□□ -2.47
NIP1YMR309C AME1P38313 324 aa-0.39□□□□□ -2.47
NIP1YMR309C YAP3P38749 330 aa-0.39□□□□□ -2.47
NIP1YMR309C PHS1P40857 217 aa-0.39□□□□□ -2.47
NIP1YMR309C MPC1P53157 130 aaKnown RBP-0.39□□□□□ -2.47
Retrieved 100 of 5,963 RNA–protein pairs in 30.2 ms