RNA–Protein interactions for RNA: YMR012W

CLU1, Transcript of Subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene CLU1, Length 3,834 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLU1	YMR012W	RAD6	P06104	172 aa		0.71	□□□□□ -2.3
CLU1	YMR012W	PGD1	P40356	397 aa		0.71	□□□□□ -2.3
CLU1	YMR012W	BAT2	P47176	376 aa	Known RBP	0.71	□□□□□ -2.3
CLU1	YMR012W	TFC1	P32367	649 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	YET1	P35723	206 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	YBR013C	P38215	129 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	TMA22	P47089	198 aa	Predicted RBP	0.7	□□□□□ -2.3
CLU1	YMR012W	CCA1	P21269	546 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	MDH2	P22133	377 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	ARO7	P32178	256 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	YKR045C	P36138	183 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	PET100	P38958	111 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	TDA4	P47153	279 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	YLR050C	Q12155	161 aa	Known RBP	0.7	□□□□□ -2.3
CLU1	YMR012W	YOR343C	Q12484	108 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	PBI2	P0CT04	75 aa	Known RBP	0.7	□□□□□ -2.3
CLU1	YMR012W	SRL3	P36167	246 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	YBR090C	P38253	122 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	FYV4	P38783	130 aa	Predicted RBP	0.7	□□□□□ -2.3
CLU1	YMR012W	FAR7	P43592	221 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	COX12	Q01519	83 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	UPS3	Q04006	179 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	YET3	Q07451	203 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	YLR053C	Q12026	108 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	YLR118C	Q12354	227 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	YMR175W-A	Q3E766	64 aa		0.7	□□□□□ -2.3
CLU1	YMR012W	FAS1	P07149	2051 aa	Known RBP	0.69	□□□□□ -2.3
CLU1	YMR012W	ATP5	P09457	212 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	YHR212W-A	P0CX91	67 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	MRS4	P23500	304 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	YEL075C	P39972	122 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	YER134C	P40081	178 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	YER189W	P40104	122 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	KNH1	P50112	268 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	SGF11	Q03067	99 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	YPR013C	Q12145	317 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	YPR010C-A	A5Z2X5	72 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	RPB5	P20434	215 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	VPS55	P47111	140 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	YMR295C	Q03559	197 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	GPA2	P10823	449 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	ANB1	P19211	157 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	MRPL17	P36528	281 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	IRC22	P40006	225 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	YER137C	P40083	148 aa	Known RBP	0.69	□□□□□ -2.3
CLU1	YMR012W	APQ12	P40532	138 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	TMA20	P89886	181 aa	Predicted RBP	0.69	□□□□□ -2.3
CLU1	YMR012W	SWC7	Q06707	132 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	VAM10	Q08474	114 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	NSL1	Q12143	216 aa		0.69	□□□□□ -2.3
CLU1	YMR012W	HYP2	P23301	157 aa	Known RBP	0.68	□□□□□ -2.3
CLU1	YMR012W	MRPL27	P36526	146 aa	Predicted RBP	0.68	□□□□□ -2.3
CLU1	YMR012W	MPC3	P53311	146 aa		0.68	□□□□□ -2.3
CLU1	YMR012W	DYN2	Q02647	92 aa		0.68	□□□□□ -2.3
CLU1	YMR012W	YGL041W-A	P0C5N3	154 aa		0.68	□□□□□ -2.3
CLU1	YMR012W	ERD2	P18414	219 aa		0.68	□□□□□ -2.3
CLU1	YMR012W	CNB1	P25296	175 aa		0.68	□□□□□ -2.3
CLU1	YMR012W	SEC17	P32602	292 aa		0.68	□□□□□ -2.3
CLU1	YMR012W	NUP49	Q02199	472 aa		0.68	□□□□□ -2.3
CLU1	YMR012W	NCE101	Q02820	53 aa		0.68	□□□□□ -2.3
CLU1	YMR012W	YMR082C	Q04276	118 aa		0.68	□□□□□ -2.3
CLU1	YMR012W	JID1	Q12350	301 aa		0.68	□□□□□ -2.3
CLU1	YMR012W	LSO2	Q3E772	92 aa	Known RBP	0.68	□□□□□ -2.3
CLU1	YMR012W	SAS5	Q99314	248 aa		0.68	□□□□□ -2.3
CLU1	YMR012W	PPT2	Q12036	173 aa		0.68	□□□□□ -2.3
CLU1	YMR012W	YOR020W-A	Q3E824	90 aa		0.68	□□□□□ -2.3
CLU1	YMR012W	YCR075W-A	Q3E830	75 aa		0.68	□□□□□ -2.3
CLU1	YMR012W	PEX4	P29340	183 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	AHT1	P29589	182 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	BRP1	P53194	125 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	YNL033W	P53964	284 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	RAD28	Q12021	506 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	YMR105W-A	Q8TGS8	64 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	RPB3	P16370	318 aa	Known RBP	0.67	□□□□□ -2.3
CLU1	YMR012W	MRPL24	P36525	258 aa	Predicted RBP	0.67	□□□□□ -2.3
CLU1	YMR012W	ARC15	P40518	154 aa	RIP-Chip data	0.67	□□□□□ -2.3	not detected
CLU1	YMR012W	LIP1	Q03579	150 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	PKR1	Q03880	122 aa	Known RBP	0.67	□□□□□ -2.3
CLU1	YMR012W	IRC19	Q07843	230 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	YLR042C	Q07990	161 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	FMP49	A0A023PZB3	126 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	QCR8	P08525	94 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	TMA19	P35691	167 aa	Known RBP	0.67	□□□□□ -2.3
CLU1	YMR012W	NSG1	P38837	291 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	COS6	P53344	381 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	NAT3	Q06504	195 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	YOR385W	Q08909	290 aa		0.67	□□□□□ -2.3
CLU1	YMR012W	RTC6	O14464	93 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	ADH3	P07246	375 aa	Known RBP	0.66	□□□□□ -2.3
CLU1	YMR012W	KRE1	P17260	313 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	SCM4	P32564	187 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	RPF1	P38805	295 aa	Known RBP	0.66	□□□□□ -2.3
CLU1	YMR012W	SPC25	P40014	221 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	AIM11	P87275	137 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	CYT2	Q00873	224 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	YDR210W	Q03482	75 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	SDH7	Q04401	133 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	YPR153W	Q06537	140 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	OCA6	Q12454	224 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	UBC4	P15731	148 aa		0.66	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 57.2 ms