RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CCNE2O96020 404 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 KRT19P08727 400 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ATF6P18850 670 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 GLMNQ92990 594 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 EYA3Q99504 573 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 PIGUQ9H490 435 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 NAGPAQ9UK23 515 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 CDC42BPBQ9Y5S2 1711 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 WBP4O75554 376 aaKnown RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 SF3A3Q12874 501 aaKnown RBP eCLIP4.85□□□□□ -1.632e-17■■■■■ 37.8
SCN1A-220ENST00000641603 PRKAA1Q13131 559 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 MSLNQ13421 630 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 C6orf52Q5T4I8 152 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 GRAMD1CQ8IYS0 662 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 PDCD10Q9BUL8 212 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 CDC42EP4Q9H3Q1 356 aaKnown RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 EPB41L1Q9H4G0 881 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ARHGEF3Q9NR81 526 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ANKRD6Q9Y2G4 727 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 PCDHB4Q9Y5E5 795 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 NCF4Q15080 339 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 COLGALT2Q8IYK4 626 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 GALNT4Q8N4A0 578 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 DNAAF3Q8N9W5 541 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 MCPH1Q8NEM0 835 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 TOR1AIP2Q8NFQ8 470 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 FAM45AQ8TCE6 357 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 PLEKHO2Q8TD55 490 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 GJA10Q969M2 543 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 TOP1MTQ969P6 601 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 CHP1Q99653 195 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 TRIM51Q9BSJ1 452 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ANO3Q9BYT9 981 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 IRX2Q9BZI1 471 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 GANQ9H2C0 597 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 JMJD4Q9H9V9 463 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 SLC52A2Q9HAB3 445 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 PLEKHA5Q9HAU0 1116 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ZC3H7BQ9UGR2 993 aaKnown RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 PTGS2P35354 604 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 TGFBR2P37173 567 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 GPD2P43304 727 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 C2CD6Q53TS8 623 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 RBM44Q6ZP01 1051 aaKnown RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 CAPN12Q6ZSI9 719 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ADAT2Q7Z6V5 191 aaKnown RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ARID3BQ8IVW6 561 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 THNSL1Q8IYQ7 743 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ZBTB1Q9Y2K1 713 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 PRG3Q9Y2Y8 225 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF185O15231 689 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 MFN2O95140 757 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 MSH3P20585 1137 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 NUP62P37198 522 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 WASHC5Q12768 1159 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 BTN2A1Q7KYR7 527 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 CREG2Q8IUH2 290 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 PROX1Q92786 737 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 UGT2B28Q9BY64 529 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ASAP1Q9ULH1 1129 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 SH3BP1Q9Y3L3 701 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 MADDQ8WXG6 1647 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 SNPHO15079 494 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 FTLP02792 175 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 SERPINA6P08185 405 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 RAG1P15918 1043 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ITGA8P53708 1063 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ZFP69Q49AA0 526 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 TRIQKQ629K1 86 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 BCL7BQ9BQE9 202 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 BBS2Q9BXC9 721 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF518BQ9C0D4 1074 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 MAP3K20Q9NYL2 800 aaKnown RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 IGSF9Q9P2J2 1179 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 SLC13A4Q9UKG4 626 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 CCDC182A6NF36 153 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 TRDMT1O14717 391 aaKnown RBP4.84□□□□□ -1.63
SCN1A-220ENST00000641603 ITIH1P19827 911 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 TUFMP49411 452 aaKnown RBP4.84□□□□□ -1.63
SCN1A-220ENST00000641603 USP46P62068 366 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 BTKQ06187 659 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 PTK6Q13882 451 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 KCNT1Q5JUK3 1230 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 C4orf50Q6ZRC1 276 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 FLCNQ8NFG4 579 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 AP3S1Q92572 193 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 PCDH9Q9HC56 1237 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 DDX18Q9NVP1 670 aaKnown RBP4.84□□□□□ -1.63
SCN1A-220ENST00000641603 TRIM10Q9UDY6 481 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 CLDN25C9JDP6 229 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 COQ9O75208 318 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 CRKP46108 304 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 CD151P48509 253 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 SULT2A1Q06520 285 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 ENDOVQ8N8Q3 282 aaKnown RBP4.84□□□□□ -1.63
SCN1A-220ENST00000641603 FAM13CQ8NE31 585 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 FAM89AQ96GI7 184 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 CDH19Q9H159 772 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 ITGA11Q9UKX5 1188 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms