RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CLYBLQ8N0X4 340 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 TTC13Q8NBP0 860 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 PPTC7Q8NI37 304 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 OTUB1Q96FW1 271 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 CPB2Q96IY4 423 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 SH2D3AQ9BRG2 576 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 RTFDC1Q9BY42 306 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 ZSWIM6Q9HCJ5 1215 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 TRMT1Q9NXH9 659 aaKnown RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 DDX43Q9NXZ2 648 aaKnown RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 A0A0G2JLL6 359 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 SMIM23A6NLE4 172 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 AGRPO00253 132 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 TEX33O43247 280 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 HOXB8P17481 243 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 HNF1BP35680 557 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 HIST2H2ACQ16777 129 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 NXNQ6DKJ4 435 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 HIST2H2AA3Q6FI13 130 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 TATDN1Q6P1N9 297 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 PRRT2Q7Z6L0 340 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 SFR1Q86XK3 245 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 TMEM86AQ8N2M4 240 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 CFAP61Q8NHU2 1237 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 MAP4K1Q92918 833 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 SCLYQ96I15 445 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 HHIPL1Q96JK4 782 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 RUNDC3BQ96NL0 473 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 LRRC37BQ96QE4 947 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 C2orf49Q9BVC5 232 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 KLC2Q9H0B6 622 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 SNTG2Q9NY99 539 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 SETD1AO15047 1707 aaKnown RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 PEX12O00623 359 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 ITGAVP06756 1048 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 SULT2A1Q06520 285 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 ACOX1Q15067 660 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 MAN2A1Q16706 1144 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 ANKRD40Q6AI12 368 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 OTUD7AQ8TE49 926 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 MORC4Q8TE76 937 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 FGD4Q96M96 766 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 MAP3K14Q99558 947 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 KCNS3Q9BQ31 491 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 NKX2-4Q9H2Z4 354 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 PARVBQ9HBI1 364 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 NFE2L3Q9Y4A8 694 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 REREQ9P2R6 1566 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 VSTM5A8MXK1 200 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 TOM1L1O75674 476 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 SERPINI2O75830 405 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 IGSF6O95976 241 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 APOA4P06727 396 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 INHBAP08476 426 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 C4BPBP20851 252 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 PSEN1P49768 467 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 LAMTOR4Q0VGL1 99 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 RESTQ13127 1097 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 TYW1BQ6NUM6 668 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 TSHZ1Q6ZSZ6 1077 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 PTF1AQ7RTS3 328 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 PCGF5Q86SE9 256 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 GUF1Q8N442 669 aaKnown RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 TTC8Q8TAM2 541 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 ENOX1Q8TC92 643 aaKnown RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 CXorf40BQ96DE9 158 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 MYCBPQ99417 103 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 ADGRE3Q9BY15 652 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 SLC13A1Q9BZW2 595 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 DMAP1Q9NPF5 467 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 RTTNQ86VV8 2226 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 IGHDP01880 384 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 ZNF445P59923 1031 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 YWHAGP61981 247 aaKnown RBP eCLIP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 KNOP1Q1ED39 458 aaKnown RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 SETMARQ53H47 684 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 OLFML2BQ68BL8 750 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 JADE1Q6IE81 842 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 METTL3Q86U44 580 aaKnown RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 FAM124AQ86V42 546 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 KREMEN2Q8NCW0 462 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 AIPL1Q9NZN9 384 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 HBS1LQ9Y450 684 aaKnown RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 OR6C75A6NL08 312 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 KCNJ18B7U540 433 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 CES2O00748 559 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 KLHL41O60662 606 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 EOMESO95936 686 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 TAC1P20366 129 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 VPS41P49754 854 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 RHOAP61586 193 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 KCNJ12Q14500 433 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 LONRF2Q1L5Z9 754 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 CRY2Q49AN0 593 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 TPGS1Q6ZTW0 290 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 EXD1Q8NHP7 514 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 P2RX5Q93086 422 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 ZBTB18Q99592 522 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 CARD6Q9BX69 1037 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms