RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 SLFN12LQ6IEE8 588 aa16.15■□□□□ 0.18
SYNE2-228ENST00000639659 TSTD1Q8NFU3 115 aa16.15■□□□□ 0.18
SYNE2-228ENST00000639659 RAD54LQ92698 747 aa16.15■□□□□ 0.18
SYNE2-228ENST00000639659 ZC3H10Q96K80 434 aaKnown RBP16.15■□□□□ 0.18
SYNE2-228ENST00000639659 CYP2S1Q96SQ9 504 aa16.15■□□□□ 0.18
SYNE2-228ENST00000639659 BLOC1S4Q9NUP1 217 aa16.15■□□□□ 0.18
SYNE2-228ENST00000639659 DDX43Q9NXZ2 648 aaKnown RBP16.15■□□□□ 0.18
SYNE2-228ENST00000639659 AGAP1Q9UPQ3 857 aa16.15■□□□□ 0.18
SYNE2-228ENST00000639659 MYO16Q9Y6X6 1858 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 CACNA1GO43497 2377 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 C1QTNF9BB2RNN3 333 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 TADA3O75528 432 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 ITGB3P05106 788 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 KRT19P08727 400 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 USP17L7P0C7H9 530 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 C1QTNF9P0C862 333 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 SCP2P22307 547 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 RPL10AP62906 217 aaKnown RBP16.14■□□□□ 0.17
SYNE2-228ENST00000639659 GTF2BQ00403 316 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 FAM160A1Q05DH4 1040 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 DAB2IPQ5VWQ8 1189 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 ARL6IP4Q66PJ3 421 aaKnown RBP16.14■□□□□ 0.17
SYNE2-228ENST00000639659 ANO7Q6IWH7 933 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 DYMQ7RTS9 669 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 SFR1Q86XK3 245 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 PDCL2Q8N4E4 241 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 OSCP1Q8WVF1 389 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 ATP2A3Q93084 1043 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 SAAL1Q96ER3 474 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 FAM84AQ96KN4 292 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 AK8Q96MA6 479 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 SLC22A12Q96S37 553 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 FAM213AQ9BRX8 229 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 UXTQ9UBK9 157 aaPredicted RBP16.14■□□□□ 0.17
SYNE2-228ENST00000639659 L1RE1Q9UN81 338 aa16.14■□□□□ 0.17
SYNE2-228ENST00000639659 HCRTO43612 131 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 HUS1O60921 280 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 GJB2P29033 226 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 DHPSP49366 369 aaPredicted RBP16.13■□□□□ 0.17
SYNE2-228ENST00000639659 MYL7Q01449 175 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 GRIN1Q05586 938 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 ZNF268Q14587 947 aaPredicted RBP16.13■□□□□ 0.17
SYNE2-228ENST00000639659 KCNB1Q14721 858 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 ZNF77Q15935 545 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 UAP1L1Q3KQV9 507 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 C2orf27AQ580R0 203 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 UNQ6494/PRO21346Q6UXR6 183 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 SYT13Q7L8C5 426 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 CYP2U1Q7Z449 544 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 SPATA2LQ8IUW3 424 aaPredicted RBP16.13■□□□□ 0.17
SYNE2-228ENST00000639659 CCDC33Q8N5R6 958 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 ARL14EPQ8N8R7 260 aaPredicted RBP16.13■□□□□ 0.17
SYNE2-228ENST00000639659 KRI1Q8N9T8 703 aaKnown RBP16.13■□□□□ 0.17
SYNE2-228ENST00000639659 SH3RF2Q8TEC5 729 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 LARP4BQ92615 738 aaKnown RBP16.13■□□□□ 0.17
SYNE2-228ENST00000639659 EZH1Q92800 747 aaPredicted RBP16.13■□□□□ 0.17
SYNE2-228ENST00000639659 FIZ1Q96SL8 496 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 CCSER1Q9C0I3 900 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 TBC1D7Q9P0N9 293 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 GTF3C4Q9UKN8 822 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 CHD6Q8TD26 2715 aa16.13■□□□□ 0.17
SYNE2-228ENST00000639659 KIAA1549LQ6ZVL6 1849 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 LNP1A1A4G5 178 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 BCLAF3A2AJT9 711 aaKnown RBP16.12■□□□□ 0.17
SYNE2-228ENST00000639659 C2orf78A6NCI8 922 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 PATE3B3GLJ2 98 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 IL18RAPO95256 599 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 PROS1P07225 676 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 ABCD1P33897 745 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 PNPLA4P41247 253 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 WNT7BP56706 349 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 USP4Q13107 963 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 NR1H3Q13133 447 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 USP39Q53GS9 565 aaKnown RBP16.12■□□□□ 0.17
SYNE2-228ENST00000639659 INTS6LQ5JSJ4 861 aaKnown RBP16.12■□□□□ 0.17
SYNE2-228ENST00000639659 SH3PXD2AQ5TCZ1 1133 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 KCNN1Q92952 543 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 PPP4R2Q9NY27 417 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 SNX9Q9Y5X1 595 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 THADAQ6YHU6 1953 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 NUP205Q92621 2012 aa16.12■□□□□ 0.17
SYNE2-228ENST00000639659 CEP295Q9C0D2 2601 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 GOLGA8IPA6NC78 632 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 GOLGA8JA6NMD2 632 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 SCAMP3O14828 347 aaKnown RBP16.11■□□□□ 0.17
SYNE2-228ENST00000639659 KHNYNO15037 678 aaKnown RBP16.11■□□□□ 0.17
SYNE2-228ENST00000639659 NOL4O94818 638 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 BCKDHBP21953 392 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 DDIT3P35638 169 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 EML3Q32P44 896 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 CRELD2Q6UXH1 353 aaPredicted RBP16.11■□□□□ 0.17
SYNE2-228ENST00000639659 ARMCX6Q7L4S7 300 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 OSTM1Q86WC4 334 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 ADGRF2Q8IZF7 708 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 CSGALNACT2Q8N6G5 542 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 FSIP1Q8NA03 581 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 ZSWIM2Q8NEG5 633 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 PIGKQ92643 395 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 KIF2CQ99661 725 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 LINC00597Q9H2U6 94 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms