RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 A0A088AWK7 358 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 hCG_1984214I3L0E3 225 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 TP73O15350 636 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 FESP07332 822 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 GRPP07492 148 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 PRR35P0CG20 571 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 PPIFP30405 207 aaKnown RBP5.32□□□□□ -1.56
CD44-239ENST00000639002 EEFSECP57772 596 aaKnown RBP5.32□□□□□ -1.56
CD44-239ENST00000639002 CYP4F2P78329 520 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 SLC44A4Q53GD3 710 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 CCDC157Q569K6 752 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 TEDDM1Q5T9Z0 273 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 ZNF280BQ86YH2 543 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 DIS3LQ8TF46 1054 aaKnown RBP5.32□□□□□ -1.56
CD44-239ENST00000639002 GLG1Q92896 1179 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 MAP3K14Q99558 947 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 RHOBTB2Q9BYZ6 727 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 STAP2Q9UGK3 403 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 SH2B3Q9UQQ2 575 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 MRPS17Q9Y2R5 130 aaKnown RBP5.32□□□□□ -1.56
CD44-239ENST00000639002 MED16Q9Y2X0 877 aa5.32□□□□□ -1.56
CD44-239ENST00000639002 ZNF804BA4D1E1 1349 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 A1L4Q6 167 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 ONECUT2O95948 504 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 CSF1RP07333 972 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 ENGP17813 658 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 VCAM1P19320 739 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 MPGP29372 298 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 VIPR2P41587 438 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 UCP3P55916 312 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 MCL1Q07820 350 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 EZH2Q15910 746 aaKnown RBP5.31□□□□□ -1.56
CD44-239ENST00000639002 ZIK1Q3SY52 487 aaPredicted RBP5.31□□□□□ -1.56
CD44-239ENST00000639002 AMOTQ4VCS5 1084 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 MTX3Q5HYI7 312 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 PCID2Q5JVF3 399 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 ZNF626Q68DY1 528 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 RGS7BPQ6MZT1 257 aaPredicted RBP5.31□□□□□ -1.56
CD44-239ENST00000639002 C11orf87Q6NUJ2 197 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 LAYNQ6UX15 382 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 B3GNT9Q6UX72 402 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 SLC29A4Q7RTT9 530 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 WDR53Q7Z5U6 358 aaPredicted RBP5.31□□□□□ -1.56
CD44-239ENST00000639002 FANCBQ8NB91 859 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 NT5C1BQ96P26 610 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 P2RX7Q99572 595 aaKnown RBP5.31□□□□□ -1.56
CD44-239ENST00000639002 SH2D3AQ9BRG2 576 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 FSD1LQ9BXM9 530 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 QTRT1Q9BXR0 403 aaKnown RBP5.31□□□□□ -1.56
CD44-239ENST00000639002 SARS2Q9NP81 518 aaKnown RBP5.31□□□□□ -1.56
CD44-239ENST00000639002 GABBR1Q9UBS5 961 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 CPA4Q9UI42 421 aa5.31□□□□□ -1.56
CD44-239ENST00000639002 NOP58Q9Y2X3 529 aaKnown RBP5.31□□□□□ -1.56
CD44-239ENST00000639002 MYO1FO00160 1098 aa5.3□□□□□ -1.56
CD44-239ENST00000639002 ADAMTS3O15072 1205 aa5.3□□□□□ -1.56
CD44-239ENST00000639002 SFPQP23246 707 aaKnown RBP eCLIP5.3□□□□□ -1.56
CD44-239ENST00000639002 KCNJ5P48544 419 aa5.3□□□□□ -1.56
CD44-239ENST00000639002 SLC11A2P49281 568 aa5.3□□□□□ -1.56
CD44-239ENST00000639002 RAB1AP62820 205 aa5.3□□□□□ -1.56
CD44-239ENST00000639002 TUBA4AP68366 448 aa5.3□□□□□ -1.56
CD44-239ENST00000639002 CEP78Q5JTW2 689 aa5.3□□□□□ -1.56
CD44-239ENST00000639002 PRAMEF17Q5VTA0 474 aa5.3□□□□□ -1.56
CD44-239ENST00000639002 NAPRTQ6XQN6 538 aa5.3□□□□□ -1.56
CD44-239ENST00000639002 COL23A1Q86Y22 540 aaPredicted RBP5.3□□□□□ -1.56
CD44-239ENST00000639002 Q8N9P0 234 aaPredicted RBP5.3□□□□□ -1.56
CD44-239ENST00000639002 MESP1Q9BRJ9 268 aa5.3□□□□□ -1.56
CD44-239ENST00000639002 BTBD3Q9Y2F9 522 aa5.3□□□□□ -1.56
CD44-239ENST00000639002 PRRT4C9JH25 899 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 SMIM22K7EJ46 135 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 QSOX1O00391 747 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 AP1G1O43747 822 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 OFD1O75665 1012 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 ALDH1L1O75891 902 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 CYP2D6P10635 497 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 NCLP19338 710 aaKnown RBP5.29□□□□□ -1.56
CD44-239ENST00000639002 KELP23276 732 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 ARFIP2P53365 341 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 MYO1EQ12965 1108 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 KLF9Q13886 244 aaPredicted RBP5.29□□□□□ -1.56
CD44-239ENST00000639002 E2F2Q14209 437 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 EPHA10Q5JZY3 1008 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 IFIT1BQ5T764 474 aaKnown RBP5.29□□□□□ -1.56
CD44-239ENST00000639002 PARS2Q7L3T8 475 aaKnown RBP5.29□□□□□ -1.56
CD44-239ENST00000639002 NEK8Q86SG6 692 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 CHSY1Q86X52 802 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 PPP1R35Q8TAP8 253 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 R3HDM4Q96D70 268 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 THAP7Q9BT49 309 aaPredicted RBP5.29□□□□□ -1.56
CD44-239ENST00000639002 RTFDC1Q9BY42 306 aaPredicted RBP5.29□□□□□ -1.56
CD44-239ENST00000639002 SEMA4CQ9C0C4 833 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 CXorf36Q9H7Y0 433 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 GLOD4Q9HC38 313 aa5.29□□□□□ -1.56
CD44-239ENST00000639002 UBXN7O94888 489 aa5.28□□□□□ -1.56
CD44-239ENST00000639002 TJP3O95049 919 aa5.28□□□□□ -1.56
CD44-239ENST00000639002 NPR1P16066 1061 aa5.28□□□□□ -1.56
CD44-239ENST00000639002 ADORA2AP29274 412 aa5.28□□□□□ -1.56
CD44-239ENST00000639002 EPHB2P29323 1055 aa5.28□□□□□ -1.56
CD44-239ENST00000639002 PDE1AP54750 535 aa5.28□□□□□ -1.56
CD44-239ENST00000639002 HOXA4Q00056 320 aaPredicted RBP5.28□□□□□ -1.56
CD44-239ENST00000639002 FGL2Q14314 439 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms