RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 CDH9Q9ULB4 789 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 NME7Q9Y5B8 376 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 DOCK6Q96HP0 2047 aa10.53□□□□□ -0.72
CLN3-261ENST00000637686 MYBPHLA2RUH7 354 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 RHOP08100 348 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 HAPLN1P10915 354 aaPredicted RBP10.52□□□□□ -0.73
CLN3-261ENST00000637686 P4HA1P13674 534 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 PTPN2P17706 415 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 GBP2P32456 591 aaPredicted RBP10.52□□□□□ -0.73
CLN3-261ENST00000637686 TUFMP49411 452 aaKnown RBP10.52□□□□□ -0.73
CLN3-261ENST00000637686 MXI1P50539 228 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 EPHB3P54753 998 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 PLD1Q13393 1074 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 TRIM14Q14142 442 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 NFE2Q16621 373 aaPredicted RBP10.52□□□□□ -0.73
CLN3-261ENST00000637686 PABPC1LQ4VXU2 614 aaKnown RBP10.52□□□□□ -0.73
CLN3-261ENST00000637686 IQCEQ6IPM2 695 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 FAM171BQ6P995 826 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 HS6ST3Q8IZP7 471 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 ELMOD1Q8N336 334 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 ITFG1Q8TB96 612 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 SPPL2BQ8TCT7 592 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 ACSF2Q96CM8 615 aaPredicted RBP10.52□□□□□ -0.73
CLN3-261ENST00000637686 ZNF512Q96ME7 567 aaPredicted RBP10.52□□□□□ -0.73
CLN3-261ENST00000637686 NAP1L5Q96NT1 182 aaPredicted RBP10.52□□□□□ -0.73
CLN3-261ENST00000637686 MYADMQ96S97 322 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 PKMYT1Q99640 499 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 LPIN3Q9BQK8 851 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 IMPG2Q9BZV3 1241 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 DPEP3Q9H4B8 488 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 TAB2Q9NYJ8 693 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 HSFX1Q9UBD0 423 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 USTQ9Y2C2 406 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 PCDHB5Q9Y5E4 795 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 DENND4AQ7Z401 1863 aa10.52□□□□□ -0.73
CLN3-261ENST00000637686 A8MXQ7 604 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 GOLGA6L6A8MZA4 724 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 CYP2F1P24903 491 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 ASPAP45381 313 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 NOP14P78316 857 aaKnown RBP10.51□□□□□ -0.73
CLN3-261ENST00000637686 PLCB2Q00722 1185 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 CETN1Q12798 172 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 KCNH2Q12809 1159 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 SPECC1LQ69YQ0 1117 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 CREBRFQ8IUR6 639 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 SPATA2LQ8IUW3 424 aaPredicted RBP10.51□□□□□ -0.73
CLN3-261ENST00000637686 ZDHHC14Q8IZN3 488 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 PLCD3Q8N3E9 789 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 CCDC150Q8NCX0 1101 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 FBXL13Q8NEE6 735 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 GIPC2Q8TF65 315 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 NUP58Q9BVL2 599 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 EDEM3Q9BZQ6 932 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 VPS16Q9H269 839 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 CRTAC1Q9NQ79 661 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 RAB20Q9NX57 234 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.51□□□□□ -0.73
CLN3-261ENST00000637686 LIMD1Q9UGP4 676 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 MUTYHQ9UIF7 546 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 COQ4Q9Y3A0 265 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.51□□□□□ -0.73
CLN3-261ENST00000637686 MUC3AQ02505 3323 aa10.51□□□□□ -0.73
CLN3-261ENST00000637686 NOTCH4Q99466 2003 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 NRG2O14511 850 aaPredicted RBP10.5□□□□□ -0.73
CLN3-261ENST00000637686 ASGR2P07307 311 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 MYL4P12829 197 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 LAMP2P13473 410 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 PTPN1P18031 435 aaKnown RBP10.5□□□□□ -0.73
CLN3-261ENST00000637686 ATF6P18850 670 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 RFX1P22670 979 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 CCR2P41597 374 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 FMO5P49326 533 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 GPR15P49685 360 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 NDST1P52848 882 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 GSDMDP57764 484 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 CYP27A1Q02318 531 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 UBXN1Q04323 297 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 ORC1Q13415 861 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 SLC5A9Q2M3M2 681 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 HSP90AA4PQ58FG1 418 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 MDH1BQ5I0G3 518 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 WDR44Q5JSH3 913 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 PRSS36Q5K4E3 855 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 CYP4A22Q5TCH4 519 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 SDHAF4Q5VUM1 108 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 C4orf50Q6ZRC1 276 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 PDZD4Q76G19 769 aaPredicted RBP10.5□□□□□ -0.73
CLN3-261ENST00000637686 DNAJB7Q7Z6W7 309 aaPredicted RBP10.5□□□□□ -0.73
CLN3-261ENST00000637686 MYCBPAPQ8TBZ2 947 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 GPR152Q8TDT2 470 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 ING5Q8WYH8 240 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 TATDN2Q93075 761 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 PSMG2Q969U7 264 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 MYLPFQ96A32 169 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 TCEAL4Q96EI5 215 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 PCED1BQ96HM7 432 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 FAXDC2Q96IV6 333 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 FAM81BQ96LP2 452 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 BCO2Q9BYV7 579 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 NIF3L1Q9GZT8 377 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms