RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 RUNX3Q13761 415 aa19.81■□□□□ 0.76
CLN6-220ENST00000637450 SURF1Q15526 300 aa19.81■□□□□ 0.76
CLN6-220ENST00000637450 DUOXA2Q1HG44 320 aa19.81■□□□□ 0.76
CLN6-220ENST00000637450 CFAP221Q4G0U5 840 aa19.81■□□□□ 0.76
CLN6-220ENST00000637450 FAM171BQ6P995 826 aa19.81■□□□□ 0.76
CLN6-220ENST00000637450 CBWD2Q8IUF1 395 aa19.81■□□□□ 0.76
CLN6-220ENST00000637450 OR5B17Q8NGF7 314 aa19.81■□□□□ 0.76
CLN6-220ENST00000637450 TRMT2BQ96GJ1 504 aaKnown RBP19.81■□□□□ 0.76
CLN6-220ENST00000637450 FUBP3Q96I24 572 aaKnown RBP eCLIP19.81■□□□□ 0.76
CLN6-220ENST00000637450 MYRFLQ96LU7 910 aa19.81■□□□□ 0.76
CLN6-220ENST00000637450 ZNF396Q96N95 335 aaPredicted RBP19.81■□□□□ 0.76
CLN6-220ENST00000637450 KIF9Q9HAQ2 790 aa19.81■□□□□ 0.76
CLN6-220ENST00000637450 HPS4Q9NQG7 708 aa19.81■□□□□ 0.76
CLN6-220ENST00000637450 HSPBP1Q9NZL4 362 aa19.81■□□□□ 0.76
CLN6-220ENST00000637450 UXTQ9UBK9 157 aaPredicted RBP19.81■□□□□ 0.76
CLN6-220ENST00000637450 PTPRJQ12913 1337 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 OTOL1A6NHN0 477 aaPredicted RBP19.8■□□□□ 0.76
CLN6-220ENST00000637450 PRR5-ARHGAP8B1AHC4 643 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 HOXA6P31267 233 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 CNR2P34972 360 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 ARHGAP8P85298 464 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 AMPD3Q01432 767 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 ZNF268Q14587 947 aaPredicted RBP19.8■□□□□ 0.76
CLN6-220ENST00000637450 LPAL2Q16609 132 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 CCDC142Q17RM4 750 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 LAIR1Q6GTX8 287 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 CNNM4Q6P4Q7 775 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 EPM2AIP1Q7L775 607 aaPredicted RBP19.8■□□□□ 0.76
CLN6-220ENST00000637450 LONP2Q86WA8 852 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 SPATA2LQ8IUW3 424 aaPredicted RBP19.8■□□□□ 0.76
CLN6-220ENST00000637450 ZNF507Q8TCN5 953 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 HPDLQ96IR7 371 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 EBF3Q9H4W6 596 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 KIAA1586Q9HCI6 787 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 PARD6AQ9NPB6 346 aa19.8■□□□□ 0.76
CLN6-220ENST00000637450 R3HCC1Q9Y3T6 440 aaKnown RBP19.8■□□□□ 0.76
CLN6-220ENST00000637450 NUP210Q8TEM1 1887 aaPredicted RBP19.79■□□□□ 0.76
CLN6-220ENST00000637450 MED19A0JLT2 244 aaPredicted RBP19.79■□□□□ 0.76
CLN6-220ENST00000637450 TRDMT1O14717 391 aaKnown RBP19.79■□□□□ 0.76
CLN6-220ENST00000637450 EIF3DO15371 548 aaKnown RBP eCLIP19.79■□□□□ 0.76
CLN6-220ENST00000637450 CUTAO60888 179 aa19.79■□□□□ 0.76
CLN6-220ENST00000637450 TADA3O75528 432 aa19.79■□□□□ 0.76
CLN6-220ENST00000637450 TNNC2P02585 160 aa19.79■□□□□ 0.76
CLN6-220ENST00000637450 SDHBP21912 280 aa19.79■□□□□ 0.76
CLN6-220ENST00000637450 LMNB2Q03252 620 aa19.79■□□□□ 0.76
CLN6-220ENST00000637450 SIM2Q14190 667 aaPredicted RBP19.79■□□□□ 0.76
CLN6-220ENST00000637450 TMEM196Q5HYL7 178 aa19.79■□□□□ 0.76
CLN6-220ENST00000637450 TRIM68Q6AZZ1 485 aa19.79■□□□□ 0.76
CLN6-220ENST00000637450 PRR23BQ6ZRT6 265 aa19.79■□□□□ 0.76
CLN6-220ENST00000637450 IQUBQ8NA54 791 aa19.79■□□□□ 0.76
CLN6-220ENST00000637450 RIN3Q8TB24 985 aa19.79■□□□□ 0.76
CLN6-220ENST00000637450 KBTBD7Q8WVZ9 684 aa19.79■□□□□ 0.76
CLN6-220ENST00000637450 DHX58Q96C10 678 aa19.79■□□□□ 0.76
CLN6-220ENST00000637450 CHFRQ96EP1 664 aa19.79■□□□□ 0.76
CLN6-220ENST00000637450 USP18Q9UMW8 372 aa19.79■□□□□ 0.76
CLN6-220ENST00000637450 ATP2C2O75185 946 aa19.78■□□□□ 0.76
CLN6-220ENST00000637450 YEATS4O95619 227 aa19.78■□□□□ 0.76
CLN6-220ENST00000637450 RETP07949 1114 aa19.78■□□□□ 0.76
CLN6-220ENST00000637450 LMO2P25791 158 aa19.78■□□□□ 0.76
CLN6-220ENST00000637450 MAGEA11P43364 429 aa19.78■□□□□ 0.76
CLN6-220ENST00000637450 ASIC1P78348 528 aa19.78■□□□□ 0.76
CLN6-220ENST00000637450 CC2D1AQ6P1N0 951 aaPredicted RBP19.78■□□□□ 0.76
CLN6-220ENST00000637450 SHC4Q6S5L8 630 aa19.78■□□□□ 0.76
CLN6-220ENST00000637450 WDR49Q8IV35 697 aa19.78■□□□□ 0.76
CLN6-220ENST00000637450 CYP2S1Q96SQ9 504 aa19.78■□□□□ 0.76
CLN6-220ENST00000637450 C7orf25Q9BPX7 421 aa19.78■□□□□ 0.76
CLN6-220ENST00000637450 CDH9Q9ULB4 789 aa19.78■□□□□ 0.76
CLN6-220ENST00000637450 TCHHQ07283 1943 aa19.78■□□□□ 0.76
CLN6-220ENST00000637450 TGFB1I1O43294 461 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 ARSAP15289 507 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 HOXC13P31276 330 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 ATXN1P54253 815 aaKnown RBP19.77■□□□□ 0.76
CLN6-220ENST00000637450 AMPD2Q01433 879 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 GRSF1Q12849 480 aaKnown RBP eCLIP19.77■□□□□ 0.76
CLN6-220ENST00000637450 SRSF5Q13243 272 aaKnown RBP19.77■□□□□ 0.76
CLN6-220ENST00000637450 PDGFRLQ15198 375 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 FAM26FQ5R3K3 315 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 HEATR6Q6AI08 1181 aaKnown RBP19.77■□□□□ 0.76
CLN6-220ENST00000637450 FSTL4Q6MZW2 842 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 C4orf50Q6ZRC1 276 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 TRAPPC11Q7Z392 1133 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 SCN4BQ8IWT1 228 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 SLC22A12Q96S37 553 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 SYT15Q9BQS2 421 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 CRTAC1Q9NQ79 661 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 AGPAT3Q9NRZ7 376 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 MAGEC2Q9UBF1 373 aaPredicted RBP19.77■□□□□ 0.76
CLN6-220ENST00000637450 NCOR2Q9Y618 2525 aa19.77■□□□□ 0.76
CLN6-220ENST00000637450 LRP3O75074 770 aa19.76■□□□□ 0.75
CLN6-220ENST00000637450 CST3P01034 146 aaPredicted RBP19.76■□□□□ 0.75
CLN6-220ENST00000637450 USP17L7P0C7H9 530 aa19.76■□□□□ 0.75
CLN6-220ENST00000637450 WARSP23381 471 aaKnown RBP19.76■□□□□ 0.75
CLN6-220ENST00000637450 FAM160A1Q05DH4 1040 aa19.76■□□□□ 0.75
CLN6-220ENST00000637450 EHHADHQ08426 723 aa19.76■□□□□ 0.75
CLN6-220ENST00000637450 SPEM2Q0P670 501 aa19.76■□□□□ 0.75
CLN6-220ENST00000637450 SNRNP35Q16560 246 aaKnown RBP19.76■□□□□ 0.75
CLN6-220ENST00000637450 PKN3Q6P5Z2 889 aa19.76■□□□□ 0.75
CLN6-220ENST00000637450 VSTM1Q6UX27 236 aa19.76■□□□□ 0.75
CLN6-220ENST00000637450 WDR5BQ86VZ2 330 aa19.76■□□□□ 0.75
CLN6-220ENST00000637450 RDH13Q8NBN7 331 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms