RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 JAG1P78504 1218 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 CYP24A1Q07973 514 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 PPP3CAQ08209 521 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 BNIP1Q12981 228 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 TRIP13Q15645 432 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-214ENST00000637038 SHROOM1Q2M3G4 852 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-214ENST00000637038 TKFCQ3LXA3 575 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 SPDYAQ5MJ70 313 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 LRRC38Q5VT99 294 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 TDRPQ86YL5 185 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 RELL1Q8IUW5 271 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 PALM2Q8IXS6 379 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 VPS52Q8N1B4 723 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 TMEM35BQ8NCS4 154 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 CYP2W1Q8TAV3 490 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 MICAL1Q8TDZ2 1067 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 PARD3BQ8TEW8 1205 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 NSMCE1Q8WV22 266 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 RSAD2Q8WXG1 361 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 CD101Q93033 1021 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 SENP7Q9BQF6 1050 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 TRIM55Q9BYV6 548 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 TDRD3Q9H7E2 651 aaKnown RBP4.19□□□□□ -1.74
SCN1A-214ENST00000637038 AGO4Q9HCK5 861 aaKnown RBP4.19□□□□□ -1.74
SCN1A-214ENST00000637038 CTNNAL1Q9UBT7 734 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 OGDHLQ9ULD0 1010 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 COQ4Q9Y3A0 265 aa4.19□□□□□ -1.74
SCN1A-214ENST00000637038 LRRD1A4D1F6 860 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 POC1B-GALNT4F8VUJ3 575 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ABLIM1O14639 778 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ATMINO43313 823 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 MED7O43513 233 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 NEBLO76041 1014 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ANP32DO95626 131 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 LSM8O95777 96 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 KRT7P08729 469 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 SLURP2P0DP57 97 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ATF7P17544 494 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 CNGA1P29973 690 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 DACT2Q5SW24 774 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 MIS18BP1Q6P0N0 1132 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 TTC27Q6P3X3 843 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 SLC47A2Q86VL8 602 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 FAM228AQ86W67 206 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ZNF576Q9H609 170 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 SYNCQ9H7C4 482 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ABCF3Q9NUQ8 709 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 TBK1Q9UHD2 729 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ZFP69BQ9UJL9 534 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ZMYND8Q9ULU4 1186 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 NEU2Q9Y3R4 380 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 NR2E1Q9Y466 385 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PCDHA10Q9Y5I2 948 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PLXNA1Q9UIW2 1896 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 TCP10L2B9ZVM9 353 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 SGK1O00141 431 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PRPF4O43172 522 aaKnown RBP eCLIP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 LPXNO60711 386 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 UNC5CO95185 931 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 RPLP2P05387 115 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 RALAP11233 206 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 SKIP12755 728 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PAX3P23760 479 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 GNA15P30679 374 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 GCKP35557 465 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 MARCKSL1P49006 195 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 MRPS35P82673 323 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 NHLH1Q02575 133 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 NFX1Q12986 1120 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 TRPC3Q13507 836 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PIGHQ14442 188 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ZYXQ15942 572 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 FAM110CQ1W6H9 321 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 MUM1Q2TAK8 710 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 P3H1Q32P28 736 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 TMEFF1Q8IYR6 380 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 GJD3Q8N144 294 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PDIK1LQ8N165 341 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 LMO3Q8TAP4 145 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 FEZF2Q8TBJ5 459 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 SH3TC2Q8TF17 1288 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PYROXD1Q8WU10 500 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 APBB2Q92870 758 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 MIEF2Q96C03 454 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 GPRASP2Q96D09 838 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 SAAL1Q96ER3 474 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 KIF12Q96FN5 646 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PAWRQ96IZ0 340 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PCDHB18PQ96TA0 734 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 RTP3Q9BQQ7 232 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 C11orf70Q9BRQ4 267 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 DDX23Q9BUQ8 820 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 MAK16Q9BXY0 300 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 FRMD8Q9BZ67 464 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ZNF518BQ9C0D4 1074 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 SSU72Q9NP77 194 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 SAR1AQ9NR31 198 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 NAALADL1Q9UQQ1 740 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms