RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 NME7Q9Y5B8 376 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 LRRD1A4D1F6 860 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 SHBGP04278 402 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 PDE4CQ08493 712 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 PTK6Q13882 451 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 ALKAL1Q6UXT8 129 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 PRUNE1Q86TP1 453 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 BEST2Q8NFU1 509 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 SOCS4Q8WXH5 440 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 RNF39Q9H2S5 420 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 PABPC3Q9H361 631 aaKnown RBP16.49■□□□□ 0.23
CLN3-251ENST00000636853 SEMA4AQ9H3S1 761 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 HOMER3Q9NSC5 361 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 WDR35Q9P2L0 1181 aa16.49■□□□□ 0.23
CLN3-251ENST00000636853 C17orf102A2RUQ5 167 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 HMGB1P1B2RPK0 211 aaPredicted RBP16.48■□□□□ 0.23
CLN3-251ENST00000636853 LRCH4O75427 683 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 GAS8O95995 478 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 SLC10A3P09131 477 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 IVDP26440 423 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 IL1R2P27930 398 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 PURAQ00577 322 aaKnown RBP16.48■□□□□ 0.23
CLN3-251ENST00000636853 IFFO1Q0D2I5 559 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 ZNF268Q14587 947 aaPredicted RBP16.48■□□□□ 0.23
CLN3-251ENST00000636853 KCNT1Q5JUK3 1230 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 ACOT1Q86TX2 421 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 CCDC25Q86WR0 208 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 CAPS2Q9BXY5 557 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 CNTN3Q9P232 1028 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 RSPH14Q9UHP6 348 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 GABRB2P47870 512 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 SLC25A11Q02978 314 aaKnown RBP16.48■□□□□ 0.23
CLN3-251ENST00000636853 GOLGA7BQ2TAP0 167 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 SPDYCQ5MJ68 293 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 C9orf57Q5W0N0 161 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 LCLAT1Q6UWP7 414 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 SYDE1Q6ZW31 735 aaPredicted RBP16.48■□□□□ 0.23
CLN3-251ENST00000636853 C7orf31Q8N865 590 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 TRPV1Q8NER1 839 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 HAUS1Q96CS2 278 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 MCRS1Q96EZ8 462 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 WHRNQ9P202 907 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 Q9Y3F1 56 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 NEU2Q9Y3R4 380 aa16.48■□□□□ 0.23
CLN3-251ENST00000636853 HCRTO43612 131 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 SHOX2O60902 331 aaPredicted RBP16.47■□□□□ 0.23
CLN3-251ENST00000636853 TJP3O95049 919 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 IGHA2P01877 340 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 PFKMP08237 780 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 C6orf222P0C671 652 aaPredicted RBP16.47■□□□□ 0.23
CLN3-251ENST00000636853 NR1D1P20393 614 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 ADCY8P40145 1251 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 MAGEA9P43362 315 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 RGS7P49802 495 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 GSCP56915 257 aaPredicted RBP16.47■□□□□ 0.23
CLN3-251ENST00000636853 PPARDQ03181 441 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 SLC29A2Q14542 456 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 PCBP1Q15365 356 aaKnown RBP eCLIP16.47■□□□□ 0.23
CLN3-251ENST00000636853 KRT71Q3SY84 523 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 PPP1R26Q5T8A7 1209 aaPredicted RBP16.47■□□□□ 0.23
CLN3-251ENST00000636853 FAM102AQ5T9C2 384 aaPredicted RBP16.47■□□□□ 0.23
CLN3-251ENST00000636853 DENND2CQ68D51 928 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 LRRC31Q6UY01 552 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 SESTD1Q86VW0 696 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 UHMK1Q8TAS1 419 aaKnown RBP16.47■□□□□ 0.23
CLN3-251ENST00000636853 SNF8Q96H20 258 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 PIWIL1Q96J94 861 aaKnown RBP16.47■□□□□ 0.23
CLN3-251ENST00000636853 LPIN3Q9BQK8 851 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 KATNAL1Q9BW62 490 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 FAM49BQ9NUQ9 324 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 DDX56Q9NY93 547 aaKnown RBP16.47■□□□□ 0.23
CLN3-251ENST00000636853 DNPEPQ9ULA0 475 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 hCG_1818297A0A087WSY0 165 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 E5RJQ4 531 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 ATF2P15336 505 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 ITIH2P19823 946 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 AXLP30530 894 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 HPDP32754 393 aaPredicted RBP16.47■□□□□ 0.23
CLN3-251ENST00000636853 CDKN2BP42772 138 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 PSMC4P43686 418 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 ITGA8P53708 1063 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 GNGT1P63211 74 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 SKOR1P84550 965 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 TFDP3Q5H9I0 405 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 UBXN11Q5T124 520 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 TTC39CQ8N584 583 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 FNIP1Q8TF40 1166 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 ZIC5Q96T25 663 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 PCSK1NQ9UHG2 260 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 KIAA1257Q9ULG3 409 aa16.47■□□□□ 0.23
CLN3-251ENST00000636853 SMIM28A0A1B0GU29 152 aa16.46■□□□□ 0.23
CLN3-251ENST00000636853 LIASO43766 372 aa16.46■□□□□ 0.23
CLN3-251ENST00000636853 AKR1A1P14550 325 aa16.46■□□□□ 0.23
CLN3-251ENST00000636853 CHKAP35790 457 aa16.46■□□□□ 0.23
CLN3-251ENST00000636853 IRAK1P51617 712 aa16.46■□□□□ 0.23
CLN3-251ENST00000636853 CRYBB1P53674 252 aaPredicted RBP16.46■□□□□ 0.23
CLN3-251ENST00000636853 OR6B2Q6IFH4 312 aa16.46■□□□□ 0.23
CLN3-251ENST00000636853 KDM7AQ6ZMT4 941 aa16.46■□□□□ 0.23
CLN3-251ENST00000636853 ZNF365Q70YC5 407 aa16.46■□□□□ 0.23
CLN3-251ENST00000636853 GSTA5Q7RTV2 222 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms