RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 APOL6Q9BWW8 343 aa13.8□□□□□ -0.2
MSH6-214ENST00000616033 ANGPTL2Q9UKU9 493 aa13.8□□□□□ -0.2
MSH6-214ENST00000616033 TDRKHQ9Y2W6 561 aaKnown RBP13.8□□□□□ -0.2
MSH6-214ENST00000616033 DCAF8L1A6NGE4 600 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 TOM1L1O75674 476 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 PSMD10O75832 226 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 PROSCO94903 275 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 MSX2P35548 267 aaPredicted RBP13.79□□□□□ -0.2
MSH6-214ENST00000616033 AQP5P55064 265 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 BPIFB4P59827 614 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 CDK16Q00536 496 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 BRDTQ58F21 947 aaPredicted RBP13.79□□□□□ -0.2
MSH6-214ENST00000616033 TCHHL1Q5QJ38 904 aaPredicted RBP13.79□□□□□ -0.2
MSH6-214ENST00000616033 CEP70Q8NHQ1 597 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 HIC2Q96JB3 615 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 MPP4Q96JB8 637 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 TRIM56Q9BRZ2 755 aaKnown RBP13.79□□□□□ -0.2
MSH6-214ENST00000616033 STX18Q9P2W9 335 aaKnown RBP13.79□□□□□ -0.2
MSH6-214ENST00000616033 PCDHGA4Q9Y5G9 962 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 IGLV3-22A0A075B6J6 115 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 IGKV6D-41A0A0C4DH26 115 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 SIGLEC16A6NMB1 481 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 H0YIN7 160 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 I3L4J1 428 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 TRPA1O75762 1119 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 OPTNQ96CV9 577 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 SERAC1Q96JX3 654 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 ANKRD27Q96NW4 1050 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 RANBP17Q9H2T7 1088 aaKnown RBP13.79□□□□□ -0.2
MSH6-214ENST00000616033 VCX3BQ9H321 246 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 TMEM206Q9H813 350 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 TUFT1Q9NNX1 390 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 VCX3AQ9NNX9 186 aa13.79□□□□□ -0.2
MSH6-214ENST00000616033 DDX60LQ5H9U9 1706 aaKnown RBP13.79□□□□□ -0.2
MSH6-214ENST00000616033 PRR5-ARHGAP8B1AHC4 643 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 PIK3R2O00459 728 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 MAGEB3O15480 346 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 PRPF4O43172 522 aaKnown RBP eCLIP13.78□□□□□ -0.21e-7■■■■■ 27.4
MSH6-214ENST00000616033 LIASO43766 372 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 JAG1P78504 1218 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 ARHGAP8P85298 464 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 TRIP10Q15642 601 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 WDR44Q5JSH3 913 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 FAM71DQ8N9W8 422 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 PANX3Q96QZ0 392 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 MMP19Q99542 508 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 ZHX2Q9Y6X8 837 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 SPECC1L-ADORA2AF8WAN1 911 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 DESP17661 470 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 PSMC5P62195 406 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 CHI3L2Q15782 390 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 KBTBD12Q3ZCT8 623 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 PPP6R3Q5H9R7 873 aaPredicted RBP13.78□□□□□ -0.2
MSH6-214ENST00000616033 RABGAP1LQ5R372 815 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 ARHGAP24Q8N264 748 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 ACER1Q8TDN7 264 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 RBM17Q96I25 401 aaKnown RBP13.78□□□□□ -0.2
MSH6-214ENST00000616033 ECSITQ9BQ95 431 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 CENPKQ9BS16 269 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 SAR1AQ9NR31 198 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 SEL1LQ9UBV2 794 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 ACTL7BQ9Y614 415 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 COPEO14579 308 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 GSTA2P09210 222 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 MUTP22033 750 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 KLRC2P26717 231 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 ADSSP30520 456 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 GNA15P30679 374 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 PHBP35232 272 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 AP2B1P63010 937 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 OCRLQ01968 901 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 CENPCQ03188 943 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 CDC16Q13042 620 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 RALGPS1Q5JS13 557 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 SCARA5Q6ZMJ2 495 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 SYDE1Q6ZW31 735 aaPredicted RBP13.78□□□□□ -0.2
MSH6-214ENST00000616033 ST13P4Q8IZP2 240 aaPredicted RBP13.78□□□□□ -0.2
MSH6-214ENST00000616033 GATA6Q92908 595 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 GCNAQ96QF7 691 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 EBF4Q9BQW3 602 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 CALN1Q9BXU9 219 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 CLUHO75153 1309 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 SPATA31A6Q5VVP1 1343 aa13.78□□□□□ -0.2
MSH6-214ENST00000616033 ADRA2BP18089 450 aa13.77□□□□□ -0.2
MSH6-214ENST00000616033 RFX1P22670 979 aa13.77□□□□□ -0.2
MSH6-214ENST00000616033 NCOA4Q13772 614 aa13.77□□□□□ -0.2
MSH6-214ENST00000616033 LIN52Q52LA3 116 aa13.77□□□□□ -0.2
MSH6-214ENST00000616033 TMEM110Q86TL2 294 aa13.77□□□□□ -0.2
MSH6-214ENST00000616033 SPATA24Q86W54 205 aa13.77□□□□□ -0.2
MSH6-214ENST00000616033 ULK2Q8IYT8 1036 aa13.77□□□□□ -0.2
MSH6-214ENST00000616033 TEKT1Q969V4 418 aa13.77□□□□□ -0.2
MSH6-214ENST00000616033 PTCD3Q96EY7 689 aaKnown RBP13.77□□□□□ -0.2
MSH6-214ENST00000616033 TTC25Q96NG3 672 aa13.77□□□□□ -0.2
MSH6-214ENST00000616033 PDP2Q9P2J9 529 aa13.77□□□□□ -0.2
MSH6-214ENST00000616033 SLC7A8Q9UHI5 535 aa13.77□□□□□ -0.2
MSH6-214ENST00000616033 XPO7Q9UIA9 1087 aaKnown RBP13.77□□□□□ -0.2
MSH6-214ENST00000616033 RABGEF1Q9UJ41 708 aa13.77□□□□□ -0.2
MSH6-214ENST00000616033 TRIM49D1C9J1S8 452 aa13.77□□□□□ -0.21
MSH6-214ENST00000616033 MAGEB2O15479 319 aa13.77□□□□□ -0.21
MSH6-214ENST00000616033 POTEJP0CG39 1038 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms