RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 C6orf222P0C671 652 aaPredicted RBP5.28□□□□□ -1.56
LINC00540-201ENST00000611481 AKR1A1P14550 325 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 PROZP22891 400 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 IL12RB1P42701 662 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 GABREP78334 506 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 ANGPT1Q15389 498 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 CC2D1BQ5T0F9 858 aaKnown RBP5.28□□□□□ -1.56
LINC00540-201ENST00000611481 TMED8Q6PL24 325 aaPredicted RBP5.28□□□□□ -1.56
LINC00540-201ENST00000611481 FAM111BQ6SJ93 734 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 GAREM2Q75VX8 874 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 NOSTRINQ8IVI9 506 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 KLHDC9Q8NEP7 349 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 MORC4Q8TE76 937 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 LENG9Q96B70 501 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 HNRNPABQ99729 332 aaKnown RBP5.28□□□□□ -1.56
LINC00540-201ENST00000611481 SPC25Q9HBM1 224 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 CTNNA3Q9UI47 895 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 PRKAB1Q9Y478 270 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 PCDHA9Q9Y5H5 950 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 R4GN57 208 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 MYO7AQ13402 2215 aa5.28□□□□□ -1.56
LINC00540-201ENST00000611481 DLG5Q8TDM6 1919 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 ANKRD18BA2A2Z9 1011 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 LINC01553A4QN01 128 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 GOLGA8BA8MQT2 603 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 GOLGA6L22H0YM25 854 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 FAM20BO75063 409 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 CRTAMO95727 393 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 RAB33AQ14088 237 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 PTPN21Q16825 1174 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 RABL3Q5HYI8 236 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 LRCH2Q5VUJ6 765 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 CCSAPQ6IQ19 270 aaPredicted RBP5.27□□□□□ -1.57
LINC00540-201ENST00000611481 UBE3BQ7Z3V4 1068 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 GPR150Q8NGU9 434 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 MAML3Q96JK9 1138 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 RPGRIP1Q96KN7 1286 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 RPL10LQ96L21 214 aaKnown RBP5.27□□□□□ -1.57
LINC00540-201ENST00000611481 GPHA2Q96T91 129 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 C17orf80Q9BSJ5 609 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 RTKNQ9BST9 563 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 FTOQ9C0B1 505 aaKnown RBP eCLIP5.27□□□□□ -1.57
LINC00540-201ENST00000611481 OSBPL5Q9H0X9 879 aaPredicted RBP5.27□□□□□ -1.57
LINC00540-201ENST00000611481 PRDM16Q9HAZ2 1276 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 HYPKQ9NX55 129 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 SLC5A4Q9NY91 659 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 SAE1Q9UBE0 346 aaPredicted RBP5.27□□□□□ -1.57
LINC00540-201ENST00000611481 CD207Q9UJ71 328 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 NUDCQ9Y266 331 aa5.27□□□□□ -1.57
LINC00540-201ENST00000611481 KIF16BQ96L93 1317 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 SIP14410 1827 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 CCDC194A0A1B0GVG4 234 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 TAF4O00268 1085 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 TBX10O75333 385 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 ENTPD3O75355 529 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 MAP4K4O95819 1239 aaPredicted RBP5.26□□□□□ -1.57
LINC00540-201ENST00000611481 APPP05067 770 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 SDHAP31040 664 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 ICAM3P32942 547 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 BPIFB4P59827 614 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 MRPS21P82921 87 aaKnown RBP5.26□□□□□ -1.57
LINC00540-201ENST00000611481 PICALMQ13492 652 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 SERINC3Q13530 473 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 CSRP2Q16527 193 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 PLEKHG6Q3KR16 790 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 TM4SF20Q53R12 229 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 FAM209AQ5JX71 171 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 RHOUQ7L0Q8 258 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 ZNF276Q8N554 614 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 CISD2Q8N5K1 135 aaKnown RBP5.26□□□□□ -1.57
LINC00540-201ENST00000611481 ANKRD53Q8N9V6 530 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 PCSK9Q8NBP7 692 aaKnown RBP5.26□□□□□ -1.57
LINC00540-201ENST00000611481 TCF25Q9BQ70 676 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 TRPV6Q9H1D0 765 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 MFSD1Q9H3U5 465 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 NRBP1Q9UHY1 535 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 PACSIN3Q9UKS6 424 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 DENND2AQ9ULE3 1009 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 RBM8AQ9Y5S9 174 aaKnown RBP5.26□□□□□ -1.57
LINC00540-201ENST00000611481 B3GALT1Q9Y5Z6 326 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 SPEGQ15772 3267 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 ROBO3Q96MS0 1386 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 SCN5AQ14524 2016 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 RALGAPA2Q2PPJ7 1873 aa5.26□□□□□ -1.57
LINC00540-201ENST00000611481 ATAD5Q96QE3 1844 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 UBE2QL1A1L167 161 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 C2orf78A6NCI8 922 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 GOLGA6L6A8MZA4 724 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 PRR5-ARHGAP8B1AHC4 643 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 C19orf81C9J6K1 198 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 NCK2O43639 380 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 STRNO43815 780 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 ARHGAP8P85298 464 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 PTPAQ15257 358 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 GAGE13Q4V321 117 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 SOWAHCQ53LP3 525 aaPredicted RBP5.25□□□□□ -1.57
LINC00540-201ENST00000611481 PLEKHG4Q58EX7 1191 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 SPATC1Q76KD6 591 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 VRK3Q8IV63 474 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 SMC5Q8IY18 1101 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms