RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 WDR44Q5JSH3 913 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 CYP4A22Q5TCH4 519 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 TTC25Q96NG3 672 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 ANKRD27Q96NW4 1050 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 FNBP1Q96RU3 617 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 CYLDQ9NQC7 956 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 COL20A1Q9P218 1284 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 ABHD2P08910 425 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 QARSP47897 775 aaKnown RBP19.24■□□□□ 0.67
UPF1-210ENST00000600689 GCLCP48506 637 aaPredicted RBP19.24■□□□□ 0.67
UPF1-210ENST00000600689 PSMC5P62195 406 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 EFCAB3Q8N7B9 438 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 ZNF516Q92618 1163 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 PGAP2Q9UHJ9 254 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 IKBKGQ9Y6K9 419 aa19.24■□□□□ 0.67
UPF1-210ENST00000600689 RTN3O95197 1032 aaPredicted RBP19.23■□□□□ 0.67
UPF1-210ENST00000600689 YWHAGP61981 247 aaKnown RBP eCLIP19.23■□□□□ 0.67
UPF1-210ENST00000600689 ZRSR2Q15696 482 aaKnown RBP19.23■□□□□ 0.67
UPF1-210ENST00000600689 PTCD3Q96EY7 689 aaKnown RBP19.23■□□□□ 0.67
UPF1-210ENST00000600689 SLITRK1Q96PX8 696 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 TUBGCP5Q96RT8 1024 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 MXRA8Q9BRK3 442 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 PCDHB2Q9Y5E7 798 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 ZWINTO95229 277 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 GSTT1P30711 240 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 GTF2BQ00403 316 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 SLC39A4Q6P5W5 647 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 MON1BQ7L1V2 547 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 ALLCQ8N6M5 410 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 ZNF526Q8TF50 670 aaPredicted RBP19.23■□□□□ 0.67
UPF1-210ENST00000600689 USP6NLQ92738 828 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 SERAC1Q96JX3 654 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 RILPQ96NA2 401 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 KCND2Q9NZV8 630 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 SYNPO2Q9UMS6 1093 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 MRPL11Q9Y3B7 192 aaKnown RBP19.23■□□□□ 0.67
UPF1-210ENST00000600689 AVILO75366 819 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 MAP3K6O95382 1288 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 HLA-DRAP01903 254 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 CYP24A1Q07973 514 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 FAAP100Q0VG06 881 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 SGSM1Q2NKQ1 1148 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 RNASEH2BQ5TBB1 312 aaKnown RBP19.23■□□□□ 0.67
UPF1-210ENST00000600689 ARID3BQ8IVW6 561 aaPredicted RBP19.23■□□□□ 0.67
UPF1-210ENST00000600689 EXD1Q8NHP7 514 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 ZNF184Q99676 751 aaPredicted RBP19.23■□□□□ 0.67
UPF1-210ENST00000600689 EPAS1Q99814 870 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 SAR1AQ9NR31 198 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 CCPG1Q9ULG6 757 aa19.23■□□□□ 0.67
UPF1-210ENST00000600689 ZNF536O15090 1300 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 ASTN2O75129 1339 aaPredicted RBP19.22■□□□□ 0.67
UPF1-210ENST00000600689 hCG_2014768A0A024R1R8 64 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 ALOX15BO15296 676 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 OPHN1O60890 802 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 RNF8O76064 485 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 STK10O94804 968 aaKnown RBP19.22■□□□□ 0.67
UPF1-210ENST00000600689 POTEJP0CG39 1038 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 CDK16Q00536 496 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 DMP1Q13316 513 aaPredicted RBP19.22■□□□□ 0.67
UPF1-210ENST00000600689 TREML1Q86YW5 311 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 KATNAL2Q8IYT4 538 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 CCDC124Q96CT7 223 aaKnown RBP19.22■□□□□ 0.67
UPF1-210ENST00000600689 ACAP3Q96P50 834 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 IQCGQ9H095 443 aaKnown RBP19.22■□□□□ 0.67
UPF1-210ENST00000600689 OCEL1Q9H607 264 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 SENP1Q9P0U3 644 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 ARHGAP42A6NI28 874 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 TXNDC9O14530 226 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 TRAFD1O14545 582 aaPredicted RBP19.22■□□□□ 0.67
UPF1-210ENST00000600689 PSTPIP1O43586 416 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 B4GALNT2Q8NHY0 566 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 CFAP36Q96G28 342 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 OXNAD1Q96HP4 312 aaPredicted RBP19.22■□□□□ 0.67
UPF1-210ENST00000600689 KCNK13Q9HB14 408 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 MYOZ2Q9NPC6 264 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 PCSK1NQ9UHG2 260 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 LNPEPQ9UIQ6 1025 aa19.22■□□□□ 0.67
UPF1-210ENST00000600689 TESPA1A2RU30 521 aaPredicted RBP19.21■□□□□ 0.67
UPF1-210ENST00000600689 MAGEA13PA6NCF6 341 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 CYB561D2O14569 222 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 PTK7Q13308 1070 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 MYBPC2Q14324 1141 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 C1orf146Q5VVC0 180 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 SPOCD1Q6ZMY3 1216 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 RBM15BQ8NDT2 890 aaKnown RBP19.21■□□□□ 0.67
UPF1-210ENST00000600689 TMEM161BQ8NDZ6 487 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 FEZF2Q8TBJ5 459 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 ACTL9Q8TC94 416 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 OTUD4Q01804 1114 aaKnown RBP19.21■□□□□ 0.67
UPF1-210ENST00000600689 RIPOR1Q6ZS17 1223 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 ZCCHC23Q6ZST2 131 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 IGDCC3Q8IVU1 814 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 CEP120Q8N960 986 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 RSAD2Q8WXG1 361 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 WDR83Q9BRX9 315 aaKnown RBP19.21■□□□□ 0.67
UPF1-210ENST00000600689 FEM1BQ9UK73 627 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 RGPD3A6NKT7 1758 aaPredicted RBP19.21■□□□□ 0.67
UPF1-210ENST00000600689 RGPD4Q7Z3J3 1758 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 TBC1D12O60347 775 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 OGDHQ02218 1023 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms