RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 CPLX3Q8WVH0 158 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 EDEM3Q9BZQ6 932 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 GANQ9H2C0 597 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 SIX2Q9NPC8 291 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 UBE2TQ9NPD8 197 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 NXF1Q9UBU9 619 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 PUF60Q9UHX1 559 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 FBXL5Q9UKA1 691 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 DNAJC12Q9UKB3 198 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 LUC7L2Q9Y383 392 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 FHOD1Q9Y613 1164 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 C2orf16Q68DN1 1984 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 TRIP11Q15643 1979 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 AKR1B15C9JRZ8 316 aaPredicted RBP12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 PIRO00625 290 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 EPHB6O15197 1021 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 GYPCP04921 128 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 PAX3P23760 479 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 CASP14P31944 242 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 OR1G1P47890 313 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 CLCNKBP51801 687 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 GCNT1Q02742 428 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 DSC1Q08554 894 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 CUL2Q13617 745 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 WDR72Q3MJ13 1102 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 N4BP2L1Q5TBK1 243 aaPredicted RBP12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 IQCEQ6IPM2 695 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 SPOPLQ6IQ16 392 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 SCARA5Q6ZMJ2 495 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 RRAGAQ7L523 313 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 TMC7Q7Z402 723 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 FMNL3Q8IVF7 1028 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 ARHGEF19Q8IW93 802 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 TMEM130Q8N3G9 435 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 PJA1Q8NG27 643 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 CXorf38Q8TB03 319 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 RSAD2Q8WXG1 361 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 FAXDC2Q96IV6 333 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 PDLIM2Q96JY6 352 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 XYLT2Q9H1B5 865 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 NUCKS1Q9H1E3 243 aaKnown RBP12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 VRTNQ9H8Y1 702 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 APOBEC3GQ9HC16 384 aaKnown RBP12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 NLRC4Q9NPP4 1024 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 DZANK1Q9NVP4 752 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 CAPN11Q9UMQ6 739 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 NUB1Q9Y5A7 615 aa12.87□□□□□ -0.35
SHKBP1-213ENST00000597325 ARHGEF37A1IGU5 675 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 CARNS1A5YM72 827 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 KPNA7A9QM74 516 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 PPEF2O14830 753 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 MFAP3LO75121 409 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 LRRN2O75325 713 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 B3GAT3O94766 335 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 NOL4O94818 638 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 SRFP11831 508 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 LAG3P18627 525 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 ZBED6P86452 979 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 TBX2Q13207 712 aaPredicted RBP12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 SMC1AQ14683 1233 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 UPP1Q16831 310 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 ARHGAP44Q17R89 818 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 GJB7Q6PEY0 223 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 CCDC149Q6ZUS6 474 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 ZNF280BQ86YH2 543 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 COLGALT2Q8IYK4 626 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 KDF1Q8NAX2 398 aaPredicted RBP12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 TATDN2Q93075 761 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 ELMO3Q96BJ8 720 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 MMS19Q96T76 1030 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 TMEM175Q9BSA9 504 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 TTYH3Q9C0H2 523 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 CACNG4Q9UBN1 327 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 MYO6Q9UM54 1294 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 SNX9Q9Y5X1 595 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 MIA3Q5JRA6 1907 aa12.86□□□□□ -0.35
SHKBP1-213ENST00000597325 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 F8VZ95 297 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 NRDCO43847 1150 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 TBC1D4O60343 1298 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 HUS1O60921 280 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 DDHD2O94830 711 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 KRT5P13647 590 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 EPCAMP16422 314 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 KRT9P35527 623 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 STAT1P42224 750 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 ASPAP45381 313 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 LILRA4P59901 499 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 DRAP1Q14919 205 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 DPY19L2P1Q6NXN4 242 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 PDXDC1Q6P996 788 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 DCLRE1AQ6PJP8 1040 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 TMC5Q6UXY8 1006 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 DSTYKQ6XUX3 929 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 GPR149Q86SP6 731 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 SLC44A3Q8N4M1 653 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 TTC39CQ8N584 583 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 GPR152Q8TDT2 470 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 ATRIPQ8WXE1 791 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms