RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 TPD52L1Q16890 204 aaPredicted RBP12.68□□□□□ -0.38
LIG3-213ENST00000590630 CCDC142Q17RM4 750 aa12.68□□□□□ -0.38
LIG3-213ENST00000590630 MDH1BQ5I0G3 518 aa12.68□□□□□ -0.38
LIG3-213ENST00000590630 SASS6Q6UVJ0 657 aa12.68□□□□□ -0.38
LIG3-213ENST00000590630 DNAJB7Q7Z6W7 309 aaPredicted RBP12.68□□□□□ -0.38
LIG3-213ENST00000590630 TMC8Q8IU68 726 aa12.68□□□□□ -0.38
LIG3-213ENST00000590630 FAM114A1Q8IWE2 563 aa12.68□□□□□ -0.38
LIG3-213ENST00000590630 NPAS3Q8IXF0 933 aa12.68□□□□□ -0.38
LIG3-213ENST00000590630 FAM200AQ8TCP9 573 aa12.68□□□□□ -0.38
LIG3-213ENST00000590630 KHSRPQ92945 711 aaKnown RBP eCLIP12.68□□□□□ -0.38
LIG3-213ENST00000590630 CNOT6LQ96LI5 555 aaKnown RBP12.68□□□□□ -0.38
LIG3-213ENST00000590630 LPIN3Q9BQK8 851 aa12.68□□□□□ -0.38
LIG3-213ENST00000590630 ELOVL4Q9GZR5 314 aa12.68□□□□□ -0.38
LIG3-213ENST00000590630 DPEP3Q9H4B8 488 aa12.68□□□□□ -0.38
LIG3-213ENST00000590630 THAP9Q9H5L6 903 aa12.68□□□□□ -0.38
LIG3-213ENST00000590630 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.68□□□□□ -0.381e-6■■■■■ 36.9
LIG3-213ENST00000590630 IGSF9Q9P2J2 1179 aa12.68□□□□□ -0.38
LIG3-213ENST00000590630 NUP210Q8TEM1 1887 aaPredicted RBP12.68□□□□□ -0.38
LIG3-213ENST00000590630 ATP8B3O60423 1300 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 LRRN2O75325 713 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 AFPP02771 609 aaKnown RBP12.67□□□□□ -0.38
LIG3-213ENST00000590630 CSH1P0DML2 217 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 CSH2P0DML3 217 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 MYL4P12829 197 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 PTMSP20962 102 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 CCR2P41597 374 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 NDST1P52848 882 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 KCNH2Q12809 1159 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 MTMR3Q13615 1198 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 TAF12Q16514 161 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 MTSS1LQ765P7 747 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 HS6ST3Q8IZP7 471 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 CRYBG2Q8N1P7 616 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 ING5Q8WYH8 240 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 LRRC3Q9BY71 257 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 KCNK12Q9HB15 430 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 ANO10Q9NW15 660 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 SORCS3Q9UPU3 1222 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 PATJQ8NI35 1801 aa12.67□□□□□ -0.38
LIG3-213ENST00000590630 ANAPC1Q9H1A4 1944 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 TECTAO75443 2155 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 ANHXE9PGG2 379 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 TRIM66O15016 1216 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 CILPO75339 1184 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 ASGR2P07307 311 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 CEBPBP17676 345 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 CD58P19256 250 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 BDNFP23560 247 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 TBXAS1P24557 533 aaPredicted RBP12.66□□□□□ -0.38
LIG3-213ENST00000590630 CDC25CP30307 473 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 HTR4Q13639 388 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 STX1AQ16623 288 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 DDR2Q16832 855 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 ACOT1Q86TX2 421 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 IRF2BP1Q8IU81 584 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 SCN4BQ8IWT1 228 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 UBALD2Q8IYN6 164 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 SHKBP1Q8TBC3 707 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 GPR152Q8TDT2 470 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 GIPC2Q8TF65 315 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 TCEAL4Q96EI5 215 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 TRMT2BQ96GJ1 504 aaKnown RBP12.66□□□□□ -0.38
LIG3-213ENST00000590630 SPATA17Q96L03 361 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 GCNAQ96QF7 691 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 NT5C1AQ9BXI3 368 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 B3GNT5Q9BYG0 378 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 GPR88Q9GZN0 384 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 TMEM63CQ9P1W3 806 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 UXTQ9UBK9 157 aaPredicted RBP12.66□□□□□ -0.38
LIG3-213ENST00000590630 HMGXB4Q9UGU5 601 aa12.66□□□□□ -0.38
LIG3-213ENST00000590630 A0A1W2PRU2 124 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 MOSPD3O75425 235 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 NOL4O94818 638 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 HMGA1P17096 107 aaKnown RBP12.65□□□□□ -0.38
LIG3-213ENST00000590630 ANXA13P27216 316 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 GABRR2P28476 465 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 GRIK1P39086 918 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 GPR15P49685 360 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 YWHAEP62258 255 aaKnown RBP12.65□□□□□ -0.38
LIG3-213ENST00000590630 TDGQ13569 410 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 CUL2Q13617 745 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 GAREM2Q75VX8 874 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 CREBRFQ8IUR6 639 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 LMO3Q8TAP4 145 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 ENOX1Q8TC92 643 aaKnown RBP12.65□□□□□ -0.38
LIG3-213ENST00000590630 EDAQ92838 391 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 TATDN2Q93075 761 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 SMARCD1Q96GM5 515 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 C8orf48Q96LL4 319 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 MYRFLQ96LU7 910 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 NT5C1BQ96P26 610 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 ARID3AQ99856 593 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 C1QTNF1Q9BXJ1 281 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 ZNF518BQ9C0D4 1074 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 EPHX3Q9H6B9 360 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 ZNF334Q9HCZ1 680 aaPredicted RBP12.65□□□□□ -0.38
LIG3-213ENST00000590630 CISHQ9NSE2 258 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 EHD2Q9NZN4 543 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 ZMYM5Q9UJ78 669 aa12.65□□□□□ -0.38
LIG3-213ENST00000590630 SLC38A8A6NNN8 435 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms