RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 ATAD1Q8NBU5 361 aa12.04□□□□□ -0.48
SMAD4-211ENST00000590499 SPATA18Q8TC71 538 aa12.04□□□□□ -0.48
SMAD4-211ENST00000590499 FGF13Q92913 245 aa12.04□□□□□ -0.48
SMAD4-211ENST00000590499 CCDC47Q96A33 483 aaKnown RBP12.04□□□□□ -0.48
SMAD4-211ENST00000590499 CCDC127Q96BQ5 260 aa12.04□□□□□ -0.48
SMAD4-211ENST00000590499 DNAJC25Q9H1X3 360 aa12.04□□□□□ -0.48
SMAD4-211ENST00000590499 CEP72Q9P209 647 aa12.04□□□□□ -0.48
SMAD4-211ENST00000590499 IGSF9Q9P2J2 1179 aa12.04□□□□□ -0.48
SMAD4-211ENST00000590499 HSFX1Q9UBD0 423 aa12.04□□□□□ -0.48
SMAD4-211ENST00000590499 CDH7Q9ULB5 785 aa12.04□□□□□ -0.48
SMAD4-211ENST00000590499 POLIQ9UNA4 740 aa12.04□□□□□ -0.48
SMAD4-211ENST00000590499 MAP4K5Q9Y4K4 846 aa12.04□□□□□ -0.48
SMAD4-211ENST00000590499 ZFP37Q9Y6Q3 630 aaPredicted RBP12.04□□□□□ -0.48
SMAD4-211ENST00000590499 KMT2EQ8IZD2 1858 aa12.04□□□□□ -0.48
SMAD4-211ENST00000590499 TMEM221A6NGB7 291 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 M0R296 226 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 GABRDO14764 452 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 GADD45BO75293 160 aaPredicted RBP12.03□□□□□ -0.48
SMAD4-211ENST00000590499 KIF20AO95235 890 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 EPHA5P54756 1037 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 DUSP4Q13115 394 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 SOWAHAQ2M3V2 549 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 HFE2Q6ZVN8 426 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 BMP8AQ7Z5Y6 402 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 OSTM1Q86WC4 334 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 METTL23Q86XA0 190 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 ELOA2Q8IYF1 753 aaPredicted RBP12.03□□□□□ -0.48
SMAD4-211ENST00000590499 TMEM86AQ8N2M4 240 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 PARD3BQ8TEW8 1205 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 KBTBD7Q8WVZ9 684 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 CCDC34Q96HJ3 373 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 HPDLQ96IR7 371 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 FNBP1Q96RU3 617 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 PKMYT1Q99640 499 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 ARHGAP9Q9BRR9 750 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 MAPK8IP1Q9UQF2 711 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 SNX9Q9Y5X1 595 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 DENND4CQ5VZ89 1909 aa12.03□□□□□ -0.48
SMAD4-211ENST00000590499 LRRIQ3A6PVS8 624 aaPredicted RBP12.02□□□□□ -0.49
SMAD4-211ENST00000590499 MAPK13O15264 365 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 CALUO43852 315 aaPredicted RBP12.02□□□□□ -0.49
SMAD4-211ENST00000590499 HUS1O60921 280 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 MOSPD3O75425 235 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 MICAL2O94851 1124 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 STAU1O95793 577 aaKnown RBP12.02□□□□□ -0.49
SMAD4-211ENST00000590499 CST3P01034 146 aaPredicted RBP12.02□□□□□ -0.49
SMAD4-211ENST00000590499 PTPN2P17706 415 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 TNNI1P19237 187 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 CCR2P41597 374 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 MCCD1P59942 119 aaPredicted RBP12.02□□□□□ -0.49
SMAD4-211ENST00000590499 SMARCB1Q12824 385 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 MYO1EQ12965 1108 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 TDGQ13569 410 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 SLC39A12Q504Y0 691 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 COBLL1Q53SF7 1204 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 C1orf220Q5T0J3 134 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 C6orf118Q5T5N4 469 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 DPH6Q7L8W6 267 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 SMYD4Q8IYR2 804 aaPredicted RBP12.02□□□□□ -0.49
SMAD4-211ENST00000590499 ADGRF2Q8IZF7 708 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 THEM5Q8N1Q8 247 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 C2orf15Q8WU43 125 aaKnown RBP12.02□□□□□ -0.49
SMAD4-211ENST00000590499 RSAD2Q8WXG1 361 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 NXPE3Q969Y0 559 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 PCMTD1Q96MG8 357 aaPredicted RBP12.02□□□□□ -0.49
SMAD4-211ENST00000590499 GSDMAQ96QA5 445 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 ACBD6Q9BR61 282 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 CORO1BQ9BR76 489 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 LRRC3Q9BY71 257 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 XYLT2Q9H1B5 865 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 TMLHEQ9NVH6 421 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 CHMP5Q9NZZ3 219 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 DUSP12Q9UNI6 340 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 MRPS23Q9Y3D9 190 aaKnown RBP12.02□□□□□ -0.49
SMAD4-211ENST00000590499 PCDHA5Q9Y5H7 936 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 CACNA1HO95180 2353 aa12.02□□□□□ -0.49
SMAD4-211ENST00000590499 HCRTO43612 131 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 SOAT2O75908 522 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 AKAP3O75969 853 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 C4BPAP04003 597 aaKnown RBP12.01□□□□□ -0.49
SMAD4-211ENST00000590499 CEBPBP17676 345 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 ATF6P18850 670 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 NR2F2P24468 414 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 AP3M2P53677 418 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 DLG4P78352 724 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 PLD1Q13393 1074 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 INTS6LQ5JSJ4 861 aaKnown RBP12.01□□□□□ -0.49
SMAD4-211ENST00000590499 ZNF658Q5TYW1 1059 aaPredicted RBP12.01□□□□□ -0.49
SMAD4-211ENST00000590499 TDRD10Q5VZ19 366 aaKnown RBP12.01□□□□□ -0.49
SMAD4-211ENST00000590499 TMC8Q8IU68 726 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 SLC44A3Q8N4M1 653 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 LEMD2Q8NC56 503 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 SPPL2BQ8TCT7 592 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 EPS8L1Q8TE68 723 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 ERCC4Q92889 916 aaPredicted RBP12.01□□□□□ -0.49
SMAD4-211ENST00000590499 FGF14Q92915 247 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 TCEAL4Q96EI5 215 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 VRTNQ9H8Y1 702 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 RMND1Q9NWS8 449 aa12.01□□□□□ -0.49
SMAD4-211ENST00000590499 DDX43Q9NXZ2 648 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms