RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 ISM2Q6H9L7 571 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 FAM109BQ6ICB4 259 aaPredicted RBP6.37□□□□□ -1.39
SMAD4-208ENST00000589706 ZC3H14Q6PJT7 736 aaKnown RBP6.37□□□□□ -1.39
SMAD4-208ENST00000589706 LRRC31Q6UY01 552 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 PPP1R42Q7Z4L9 355 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 ZNF34Q8IZ26 560 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 TDHQ8IZJ6 230 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 AGBL3Q8NEM8 1001 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 GRAPLQ8TC17 118 aaPredicted RBP6.37□□□□□ -1.39
SMAD4-208ENST00000589706 C17orf50Q8WW18 174 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 RIN2Q8WYP3 895 aaPredicted RBP6.37□□□□□ -1.39
SMAD4-208ENST00000589706 ALG3Q92685 438 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 HDAC10Q969S8 669 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 CLMNQ96JQ2 1002 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 HIST1H2AHQ96KK5 128 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 OSBPL9Q96SU4 736 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 CGRRF1Q99675 332 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 HIST1H2AJQ99878 128 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 SLX1AQ9BQ83 275 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 FUCA2Q9BTY2 467 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 OR10A5Q9H207 317 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 BHMT2Q9H2M3 363 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 SEMA6BQ9H3T3 888 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 PTPRHQ9HD43 1115 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 ARFGAP3Q9NP61 516 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 PLCB1Q9NQ66 1216 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 KCMF1Q9P0J7 381 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 KLHL14Q9P2G3 628 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 ORC3Q9UBD5 711 aaPredicted RBP6.37□□□□□ -1.39
SMAD4-208ENST00000589706 ABCF2Q9UG63 623 aa6.37□□□□□ -1.39
SMAD4-208ENST00000589706 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.37□□□□□ -1.39
SMAD4-208ENST00000589706 MAP3K15Q6ZN16 1313 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 PHLPP2Q6ZVD8 1323 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 GOLGA6L10A6NI86 522 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 AHCYL1O43865 530 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 NRP2O60462 931 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 CUTAO60888 179 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 RTN3O95197 1032 aaPredicted RBP6.36□□□□□ -1.39
SMAD4-208ENST00000589706 SKILP12757 684 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 GCKP35557 465 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 CD97P48960 835 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 CACNB3P54284 484 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 WDR43Q15061 677 aaKnown RBP eCLIP6.36□□□□□ -1.39
SMAD4-208ENST00000589706 PLEKHN1Q494U1 663 aaPredicted RBP6.36□□□□□ -1.39
SMAD4-208ENST00000589706 FAM83BQ5T0W9 1011 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 RNF220Q5VTB9 566 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 LIPIQ6XZB0 460 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 MIGA2Q7L4E1 593 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 IQCA1Q86XH1 822 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 MFN1Q8IWA4 741 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 CCDC170Q8IYT3 715 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 CEP112Q8N8E3 955 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 GLB1L3Q8NCI6 653 aaPredicted RBP6.36□□□□□ -1.39
SMAD4-208ENST00000589706 AGBL5Q8NDL9 886 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 ACRBPQ8NEB7 543 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 VPS37AQ8NEZ2 397 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 MAFAQ8NHW3 353 aaPredicted RBP6.36□□□□□ -1.39
SMAD4-208ENST00000589706 WDR48Q8TAF3 677 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 U2AF1L4Q8WU68 220 aaKnown RBP6.36□□□□□ -1.39
SMAD4-208ENST00000589706 CCDC34Q96HJ3 373 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 INTS4Q96HW7 963 aaKnown RBP6.36□□□□□ -1.39
SMAD4-208ENST00000589706 TMX3Q96JJ7 454 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 EYA3Q99504 573 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 ARHGAP39Q9C0H5 1083 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 PPCSQ9HAB8 311 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 DMRT3Q9NQL9 472 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 KMT5AQ9NQR1 393 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 UTP6Q9NYH9 597 aaKnown RBP6.36□□□□□ -1.39
SMAD4-208ENST00000589706 ZMYND8Q9ULU4 1186 aaPredicted RBP6.36□□□□□ -1.39
SMAD4-208ENST00000589706 DMTF1Q9Y222 760 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.36□□□□□ -1.39
SMAD4-208ENST00000589706 CFAP20Q9Y6A4 193 aaKnown RBP6.36□□□□□ -1.39
SMAD4-208ENST00000589706 SCN9AQ15858 1988 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 LAMB1P07942 1786 aa6.36□□□□□ -1.39
SMAD4-208ENST00000589706 TTC41PQ6P2S7 1318 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 CCDC151A5D8V7 595 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 CAPN8A6NHC0 703 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 KIAA1324LA8MWY0 1029 aaPredicted RBP6.35□□□□□ -1.39
SMAD4-208ENST00000589706 ZSCAN9O15535 394 aaPredicted RBP6.35□□□□□ -1.39
SMAD4-208ENST00000589706 ERLIN1O75477 346 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 FSBPO95073 299 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 FESP07332 822 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 CCDC192P0DO97 292 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 IL12RB1P42701 662 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 CCNHP51946 323 aaPredicted RBP6.35□□□□□ -1.39
SMAD4-208ENST00000589706 PRMT2P55345 433 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 UBE2HP62256 183 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 GPSM2P81274 684 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 DEUP1Q05D60 604 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 IL10RAQ13651 578 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 KIF22Q14807 665 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 IQCB1Q15051 598 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 SKIDA1Q1XH10 827 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 CCDC38Q502W7 563 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 PPP4R3AQ6IN85 833 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 KCNV1Q6PIU1 500 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 C1orf228Q6PIY5 440 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 TMC5Q6UXY8 1006 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 CD300LDQ6UXZ3 194 aa6.35□□□□□ -1.39
SMAD4-208ENST00000589706 KIF6Q6ZMV9 814 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms