RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	AGMO	Q6ZNB7	445 aa		16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	LIMS2	Q7Z4I7	341 aa		16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	TMEM35B	Q8NCS4	154 aa		16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	LPP	Q93052	612 aa		16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	PBK	Q96KB5	322 aa		16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	RPS6KC1	Q96S38	1066 aa		16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	LHX5	Q9H2C1	402 aa		16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318		O00370	1275 aa		16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	ZNF623	O75123	536 aa		16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	ITGA4	P13612	1032 aa		16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	MLH1	P40692	756 aa		16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	MAMLD1	Q13495	774 aa		16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	MBTPS1	Q14703	1052 aa		16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	CFAP221	Q4G0U5	840 aa		16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	GLE1	Q53GS7	698 aa	Known RBP	16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	TTC39C	Q8N584	583 aa		16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	ALG3	Q92685	438 aa		16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	PAK6	Q9NQU5	681 aa	Predicted RBP	16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	MIOS	Q9NXC5	875 aa		16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	GDAP2	Q9NXN4	497 aa		16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	ANAPC7	Q9UJX3	599 aa		16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	SQOR	Q9Y6N5	450 aa		16.27	■□□□□ 0.19
DDX39A-209	ENST00000589318	TMEM110-MUSTN1	A8MSY1	372 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	ARVCF	O00192	962 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	MED7	O43513	233 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	VDR	P11473	427 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	LSP1	P33241	339 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	PAFAH1B1	P43034	410 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	SLMAP	Q14BN4	828 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	CCDC181	Q5TID7	509 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	SND1	Q7KZF4	910 aa	Known RBP eCLIP	16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	RASGEF1C	Q8N431	466 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	ARFGAP2	Q8N6H7	521 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	KBTBD7	Q8WVZ9	684 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	KRT35	Q92764	455 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	GAD1	Q99259	594 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	NT5C1A	Q9BXI3	368 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	CD248	Q9HCU0	757 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318	PTPN22	Q9Y2R2	807 aa		16.26	■□□□□ 0.19
DDX39A-209	ENST00000589318		A0A0U1RQF3	1178 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	KPNA7	A9QM74	516 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	MICAL2	O94851	1124 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	IGFBP6	P24592	240 aa	Predicted RBP	16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	MARCKSL1	P49006	195 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	CNGA2	Q16280	664 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	PTPN20	Q4JDL3	420 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	LIN9	Q5TKA1	542 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	PARP9	Q8IXQ6	854 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	CCDC13	Q8IYE1	715 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	USP38	Q8NB14	1042 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	ACTRT1	Q8TDG2	376 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	ZNF560	Q96MR9	790 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	SLC40A1	Q9NP59	571 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	RBM12	Q9NTZ6	932 aa	Known RBP	16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	GIT1	Q9Y2X7	761 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	TDRD15	B5MCY1	1934 aa	Known RBP	16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	ARL5C	A6NH57	179 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	KBTBD13	C9JR72	458 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	FAM107A	O95990	144 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	PNPLA4	P41247	253 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	TAF6	P49848	677 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	PEX5	P50542	639 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	CDK7	P50613	346 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	SARNP	P82979	210 aa	Known RBP	16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	MTFR1	Q15390	333 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	ZNF473	Q8WTR7	871 aa	Known RBP	16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	HEXIM2	Q96MH2	286 aa	Known RBP	16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	ADAM2	Q99965	735 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	CARD9	Q9H257	536 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	CACNG4	Q9UBN1	327 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	TJP2	Q9UDY2	1190 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	TMEM59L	Q9UK28	342 aa		16.25	■□□□□ 0.19
DDX39A-209	ENST00000589318	MIF4GD	A9UHW6	222 aa	Known RBP	16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	HCRT	O43612	131 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	CEP104	O60308	925 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	NEBL	O76041	1014 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	GJB6	O95452	261 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	CALB1	P05937	261 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	FGFR1	P11362	822 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	GPD2	P43304	727 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	RAB27A	P51159	221 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	LILRA4	P59901	499 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	RNASE9	P60153	205 aa	Known RBP	16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	SGO2	Q562F6	1265 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	C6orf89	Q6UWU4	347 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	CCDC121	Q6ZUS5	278 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	ERICH1	Q86X53	443 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	HACE1	Q8IYU2	909 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	MAB21L3	Q8N8X9	362 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	C12orf29	Q8N999	325 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	SGSM3	Q96HU1	749 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	KIAA1257	Q9ULG3	409 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	SCIN	Q9Y6U3	715 aa		16.24	■□□□□ 0.19
DDX39A-209	ENST00000589318	DNM1L	O00429	736 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	CTNNA2	P26232	953 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	CTNNA1	P35221	906 aa	Known RBP	16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	SV2C	Q496J9	727 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	PPP1R15B	Q5SWA1	713 aa		16.23	■□□□□ 0.19
DDX39A-209	ENST00000589318	LCLAT1	Q6UWP7	414 aa		16.23	■□□□□ 0.19

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms