RNA–Protein interactions for RNA: ENST00000580713.1

TOP3A-210, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 474 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-210ENST00000580713 ITPR1Q14643 2758 aa11.62□□□□□ -0.55
TOP3A-210ENST00000580713 PHLPP2Q6ZVD8 1323 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 TOB1P50616 345 aaPredicted RBP11.61□□□□□ -0.55
TOP3A-210ENST00000580713 SEC13P55735 322 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 PEX3P56589 373 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 STK38Q15208 465 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 SLC10A6Q3KNW5 377 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 C2orf27AQ580R0 203 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 PIP4P1Q86T03 277 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 TMEFF1Q8IYR6 380 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 CCDC26Q8TAB7 109 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 LEO1Q8WVC0 666 aaPredicted RBP11.61□□□□□ -0.55
TOP3A-210ENST00000580713 ZBTB45Q96K62 511 aaPredicted RBP11.61□□□□□ -0.55
TOP3A-210ENST00000580713 SPATA32Q96LK8 384 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 MTMR9Q96QG7 549 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 CCDC86Q9H6F5 360 aaKnown RBP11.61□□□□□ -0.55
TOP3A-210ENST00000580713 ECT2Q9H8V3 914 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 KIF9Q9HAQ2 790 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 IL21Q9HBE4 155 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 ZMYM5Q9UJ78 669 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 TBX20Q9UMR3 447 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 PCDHGA4Q9Y5G9 962 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 CLIC4Q9Y696 253 aa11.61□□□□□ -0.55
TOP3A-210ENST00000580713 PRPF40AO75400 957 aaKnown RBP11.6□□□□□ -0.55
TOP3A-210ENST00000580713 ALDH1A2O94788 518 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 YEATS4O95619 227 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 RPA1P27694 616 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 NMT1P30419 496 aaKnown RBP11.6□□□□□ -0.55
TOP3A-210ENST00000580713 MATR3P43243 847 aaKnown RBP eCLIP11.6□□□□□ -0.55
TOP3A-210ENST00000580713 NPTX2P47972 431 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 IFNAR2P48551 515 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 NASPP49321 788 aaPredicted RBP11.6□□□□□ -0.55
TOP3A-210ENST00000580713 FAM193AP78312 1265 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 NR1H3Q13133 447 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 SEMA3BQ13214 749 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 DMP1Q13316 513 aaPredicted RBP11.6□□□□□ -0.55
TOP3A-210ENST00000580713 SF3A1Q15459 793 aaKnown RBP11.6□□□□□ -0.55
TOP3A-210ENST00000580713 ZNF423Q2M1K9 1284 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 SLC39A12Q504Y0 691 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 TTC38Q5R3I4 469 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 TXNDC8Q6A555 127 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 SYT12Q8IV01 421 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 CCDC33Q8N5R6 958 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 RLN3Q8WXF3 142 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 MRPS31Q92665 395 aaKnown RBP11.6□□□□□ -0.55
TOP3A-210ENST00000580713 EZH1Q92800 747 aaPredicted RBP11.6□□□□□ -0.55
TOP3A-210ENST00000580713 LRIG1Q96JA1 1093 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 SPACA7Q96KW9 195 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 CNOT6LQ96LI5 555 aaKnown RBP11.6□□□□□ -0.55
TOP3A-210ENST00000580713 TMEM60Q9H2L4 133 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 BHMT2Q9H2M3 363 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 TMEM134Q9H6X4 195 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 KMT5AQ9NQR1 393 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 FSCN3Q9NQT6 498 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 DUS2Q9NX74 493 aaKnown RBP11.6□□□□□ -0.55
TOP3A-210ENST00000580713 MBD1Q9UIS9 605 aaPredicted RBP11.6□□□□□ -0.55
TOP3A-210ENST00000580713 RCOR1Q9UKL0 485 aa11.6□□□□□ -0.55
TOP3A-210ENST00000580713 ATXN2Q99700 1313 aaKnown RBP11.6□□□□□ -0.55
TOP3A-210ENST00000580713 CITO14578 2027 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 FAM221BA6H8Z2 402 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 UPK3BL1B0FP48 263 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 UPK3BL2E5RIL1 263 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 WNT7AO00755 349 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 TNFRSF10BO14763 440 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 OPHN1O60890 802 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 BMP15O95972 392 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 CAPNS1P04632 268 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 CXCL8P10145 99 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 ODC1P11926 461 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 ATF6P18850 670 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 TYMPP19971 482 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 DDX6P26196 483 aaKnown RBP eCLIP11.59□□□□□ -0.55
TOP3A-210ENST00000580713 LRPAP1P30533 357 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 MCM7P33993 719 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 GUCY2FP51841 1108 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 MTF1Q14872 753 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 NOLC1Q14978 699 aaKnown RBP eCLIP11.59□□□□□ -0.55
TOP3A-210ENST00000580713 LMBRD2Q68DH5 695 aaPredicted RBP11.59□□□□□ -0.55
TOP3A-210ENST00000580713 RAB44Q7Z6P3 723 aaPredicted RBP11.59□□□□□ -0.55
TOP3A-210ENST00000580713 RASSF3Q86WH2 238 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 LINC00301Q8NCQ3 95 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 MDGA1Q8NFP4 955 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 RIN3Q8TB24 985 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 ATP2A3Q93084 1043 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 BBC3Q96PG8 261 aaPredicted RBP11.59□□□□□ -0.55
TOP3A-210ENST00000580713 LMBRD1Q9NUN5 540 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 TMEM74BQ9NUR3 256 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 BCCIPQ9P287 314 aaKnown RBP eCLIP11.59□□□□□ -0.55
TOP3A-210ENST00000580713 HSFX1Q9UBD0 423 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 UBQLN1Q9UMX0 589 aaKnown RBP11.59□□□□□ -0.55
TOP3A-210ENST00000580713 MAGED2Q9UNF1 606 aaPredicted RBP11.59□□□□□ -0.55
TOP3A-210ENST00000580713 PCDHB9Q9Y5E1 797 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 PCDHB6Q9Y5E3 794 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 IGSF10Q6WRI0 2623 aa11.59□□□□□ -0.55
TOP3A-210ENST00000580713 ASXL3Q9C0F0 2248 aa11.58□□□□□ -0.56
TOP3A-210ENST00000580713 ABLIM1O14639 778 aa11.58□□□□□ -0.56
TOP3A-210ENST00000580713 SPTLC2O15270 562 aa11.58□□□□□ -0.56
TOP3A-210ENST00000580713 XPOTO43592 962 aaKnown RBP11.58□□□□□ -0.56
TOP3A-210ENST00000580713 NUDT7P0C024 238 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms